Co-expression analysis

Gene ID	1619831_a_at
Gene name	hypothetical protein LOC100252479
Homology with Arabidopsis	Similar to At4g32460: - (HF=6e-10)
Module size	24 genes
NF	0.37
%ile	54.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	95.6	0.91	1619831_a_at	BQ794924	hypothetical protein LOC100252479	-	6e-10	At4g32460	-	O.I.	H.G.	S.X.	Please select
0.76	91.5	0.93	1620496_at	CF214365	hypothetical protein LOC100257468	-	3e-7	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.92	1616183_at	CF405742	hypothetical protein LOC100257468	-	3e-1	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.94	1617750_at	CB005665	-	-	3e-20	At5g35180	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.94	1607101_s_at	CF603353	hypothetical protein LOC100245611	-	2e-67	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.92	1614987_at	CF609746	hypothetical protein LOC100241685	-	1e-15	At1g51340	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1612181_at	CF518786	hypothetical protein LOC100241990	-	7e-6	At4g14100	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.92	1620674_at	CF603413	-	-	2e-5	At5g45428	CPuORF24 (Conserved peptide upstream open reading frame 24)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.93	1609680_at	CB340260	hypothetical protein LOC100263250	-	8e-37	At1g06820	CRTISO (CAROTENOID ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1614416_at	CD013543	hypothetical protein LOC100244960	-	8e-6	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.94	1620480_at	BQ793426	hypothetical protein LOC100266309	-	4e-1	At3g51325	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.94	1614297_at	BQ796093	hypothetical protein LOC100264651	-	2e-6	At4g32000	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.95	1621508_at	CB005665	hypothetical protein LOC100260203	-	3e-20	At5g35180	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.94	1606826_at	CF210409	hypothetical protein LOC100250592	-	1e-7	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.94	1610742_at	CB008464	similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	-	1e-20	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.94	1610617_at	CB916396	hypothetical protein LOC100258419	-	6e-3	At2g41475	-	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.92	1607319_at	CB974682	hypothetical protein LOC100253247	-	4e-22	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.94	1610862_at	CF215748	hypothetical protein LOC100260563	-	2e+0	At3g62650	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.95	1613034_at	BQ797491	hypothetical protein LOC100248519	-	1e-1	At1g09870	histidine acid phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.93	1614834_at	BQ794614	vacuolar pyrophosphatase	-	5e-156	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.92	1616302_at	CB912509	ripening-related protein-like	-	4e-11	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.94	1607131_at	CB346815	hypothetical protein LOC100246113	-	2e+0	At2g16595	-	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.94	1621516_at	CB923323	hypothetical protein LOC100244761	-	2e-3	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.94	1609810_at	CF608775	hypothetical protein LOC100245397	-	3e-32	At4g08900	arginase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.0	88.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
1.8	86.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.8	86.0	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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