Co-expression analysis

Gene ID	1619828_at
Gene name	hypothetical protein LOC100260718
Homology with Arabidopsis	Similar to At4g21213: unknown protein (HF=2e-1)
Module size	22 genes
NF	0.46
%ile	69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.4	0.91	1619828_at	CF371771	hypothetical protein LOC100260718	-	2e-1	At4g21213	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.93	1617507_s_at	CF206215.1	-	-	4e+0	Atmg00550	-	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.95	1606526_at	BQ799338	hypothetical protein LOC100244223	-	4e-3	At3g07565	DNA binding	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.93	1618960_at	CF404640	hypothetical protein LOC100251117	-	3e+0	At3g58310	receptor-like protein kinase-related	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.94	1620152_at	CD004112	hypothetical protein LOC100252793	-	4e-1	At2g28500	LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.95	1617605_at	CF513977	-	-	0	Atcg00680	-	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.96	1612469_at	CF205528.1	hypothetical protein LOC100248700	-	3e-5	At4g34190	SEP1 (STRESS ENHANCED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1609422_a_at	CA816734	-	-	2e-12	Atcg00050	-	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1612624_at	CB974055	similar to Os06g0598500	-	0	Atcg00540	-	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1609173_at	CF373658	-	-	2e+0	At1g27350	-	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1618379_s_at	CB343512	-	-	1e+0	At3g49115	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.95	1613911_s_at	CF201679.1	similar to Os01g0789500 /// similar to ribosomal protein S3	-	2e-42	Atcg00820	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1619209_at	CA817415	-	-	2e+0	At1g76680	OPR1	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.94	1620380_x_at	CF203025.1	-	-	1e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.94	1609380_x_at	CF203033.1	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1614462_at	CB343121	-	-	4e-63	Atcg00300	-	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.94	1617237_s_at	CF207946	-	-	9e-12	At2g38170	CAX1 (cation exchanger 1)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.94	1621187_s_at	CF201896.1	-	-	8e+0	At5g50345	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.96	1621345_x_at	CF204350.1	-	-	4e+0	At4g28703	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1622744_at	CF201679.1	similar to Os01g0789500 /// similar to ribosomal protein S3	-	2e-42	Atcg00820	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1613337_x_at	CF204544.1	-	-	3e-1	At4g28703	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.94	1621593_s_at	AF347624.1	-	-	2e+0	At2g31083	CLE5 (CLAVATA3/ESR-RELATED 5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	96.4	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.6	83.3	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage