CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619820_s_at

Gene name hypothetical protein LOC100245630
Homology with Arabidopsis Similar to At4g26160: ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) (HF=8e-9)

Module size 6 genes

NF 0.69

%ile 93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 83.2 0.94 1619820_s_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) O.I. H.G. S.X.
0.91 98.8 0.95 1620683_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) O.I. H.G. S.X.
0.71 89.5 0.93 1608259_at CF205412.1 hypothetical protein LOC100255358 - 2e-6 At5g59520 ZIP2 O.I. H.G. S.X.
0.67 87.9 0.96 1622760_at CD719223 hypothetical protein LOC100266427 - 1e+0 At3g61920 unknown protein O.I. H.G. S.X.
0.40 57.7 0.95 1618607_s_at CB972339 hypothetical protein LOC100255358 - 1e-3 At1g55910 ZIP11 (ZINC TRANSPORTER 11 PRECURSOR) O.I. H.G. S.X.
0.40 57.7 0.96 1617846_at CF210020 hypothetical protein LOC100242395 - 2e-47 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.9 93.8 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
2.1 89.1 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
2.1 89.1 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.9 87.2 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6434.2.S1_at, orthologous to the query gene, 1619820_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 64.5 Ta.6434.2.S1_at At4g26160 - - 1e-11 At4g29670 thioredoxin family protein O.I. H.G. S.X.
0.47 67.9 Ta.22791.1.S1_at At4g26160 - - 2e-13 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) O.I. H.G. S.X.
0.43 62.2 Ta.4922.1.S1_at At4g26160 - - 1e-1 At3g61080 fructosamine kinase family protein O.I. H.G. S.X.
0.40 58.4 Ta.11839.1.S1_a_at At4g26160 - - 2e-6 At1g76760 ATY1 (ARABIDOPSIS THIOREDOXIN Y1) O.I. H.G. S.X.
0.35 49.8 Ta.12375.1.A1_at At4g26160 - - 1e-7 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) O.I. H.G. S.X.
0.20 24.0 Ta.28242.1.S1_at At4g26160 - - 3e-9 At5g50250 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage