CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619820_s_at

Gene name hypothetical protein LOC100245630
Homology with Arabidopsis Similar to At4g26160: ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) (HF=8e-9)

Module size 6 genes

NF 0.69

%ile 93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 83.2 0.94 1619820_s_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) O.I. H.G. S.X.
0.91 98.8 0.95 1620683_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) O.I. H.G. S.X.
0.71 89.5 0.93 1608259_at CF205412.1 hypothetical protein LOC100255358 - 2e-6 At5g59520 ZIP2 O.I. H.G. S.X.
0.67 87.9 0.96 1622760_at CD719223 hypothetical protein LOC100266427 - 1e+0 At3g61920 unknown protein O.I. H.G. S.X.
0.40 57.7 0.95 1618607_s_at CB972339 hypothetical protein LOC100255358 - 1e-3 At1g55910 ZIP11 (ZINC TRANSPORTER 11 PRECURSOR) O.I. H.G. S.X.
0.40 57.7 0.96 1617846_at CF210020 hypothetical protein LOC100242395 - 2e-47 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.9 93.8 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
2.1 89.1 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
2.1 89.1 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.9 87.2 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37

Inter-species module comparison

A co-expression module including the rice gene, Os05g0200100, orthologous to the query gene, 1619820_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.78 93.4 Os05g0200100 At4g26160 - Thioredoxin-related domain containing protein 3e-30 At4g29670 thioredoxin family protein O.I. H.G. S.X.
0.63 82.7 Os05g0571400 At4g26160 - Conserved hypothetical protein 4e-4 At1g64355 unknown protein O.I. H.G. S.X.
0.58 77.0 Os02g0610800 At4g26160 - Protein of unknown function DUF1092 family protein 7e-1 At4g39260 GR-RBP8 O.I. H.G. S.X.
0.55 73.7 Os05g0404200 At4g26160 - Methionine sulfoxide reductase B domain containingprotein 2e-18 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) O.I. H.G. S.X.
0.54 71.9 Os05g0388500 At4g26160 - 50S ribosomal protein L1 2e-26 At3g63490 ribosomal protein L1 family protein O.I. H.G. S.X.
0.54 71.9 Os06g0146300 At4g26160 - Conserved hypothetical protein 6e-2 At5g27560 unknown protein O.I. H.G. S.X.
0.53 71.3 Os03g0331600 At4g26160 - Conserved hypothetical protein 2e-12 At5g58250 unknown protein O.I. H.G. S.X.
0.52 69.6 Os08g0167500 At4g26160 - - 1e-5 At2g47910 CRR6 (chlororespiratory reduction 6) O.I. H.G. S.X.
0.46 60.9 Os05g0481000 At4g26160 - Serine/threonine protein phosphatase 2B catalyticsubunit, beta isoform (EC 3.1.3.16) (Calmodulin-dependentcalcineurin A subunit, beta isoform) (CAM-PRP catalyticsubunit). Splice isoform 2 1e-17 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) O.I. H.G. S.X.
0.44 58.1 Os02g0794400 At4g26160 - Initiation factor 3 family protein 2e-1 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.42 53.9 Os08g0562100 At4g26160 - Sorghum chloroplast CM3 malate dehydrogenase(NADP) (Fragment) 7e-20 At5g58330 malate dehydrogenase (NADP), chloroplast, putative O.I. H.G. S.X.
0.41 52.4 Os03g0729200 At4g26160 - Conserved hypothetical protein 6e-1 At5g65840 - O.I. H.G. S.X.
0.40 51.1 Os07g0260300 At4g26160 - Thioredoxin-like domain containing protein 2e-4 At1g21350 antioxidant/ oxidoreductase O.I. H.G. S.X.
0.38 46.9 Os07g0204900 At4g26160 - Zeta-carotene desaturase (Fragment) 1e-19 At3g04870 ZDS (ZETA-CAROTENE DESATURASE) O.I. H.G. S.X.
0.33 38.8 Os02g0567100 At4g26160 - Thioredoxin-related domain containing protein 7e+0 At5g28820 unknown protein O.I. H.G. S.X.
0.31 34.5 Os09g0249900 At4g26160 - Ferredoxin-thioredoxin reductase (Fragment) 2e-18 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein O.I. H.G. S.X.
0.29 31.1 Os01g0924000 At4g26160 - Chloroplast 50S ribosomal protein L27 (Fragment) 6e-2 At5g40950 RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) O.I. H.G. S.X.
0.28 31.1 Os01g0798500 At4g26160 - Malate synthase-like family protein 2e-3 At5g44650 unknown protein O.I. H.G. S.X.
0.24 22.4 Os01g0633000 At4g26160 - Ribosomal protein L31 family protein 4e-1 At4g03590 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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