Co-expression analysis

Gene ID 1619784_at
Gene name hypothetical protein LOC100248174
Homology with ArabidopsisSimilar to At5g23450: ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1) (HF=2e-9)
Module size 9 genes
NF 0.49
%ile 73.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4868.80.981619784_atCF209299hypothetical protein LOC100248174-2e-9At5g23450ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)O.I.H.G.S.X.
0.7189.50.991620494_atCF414991--1e+0At5g55190RAN3 (RAN GTPASE 3)O.I.H.G.S.X.
0.6384.30.991611458_atCF207715hypothetical protein LOC100243644-2e-18At2g35530bZIP transcription factor family proteinO.I.H.G.S.X.
0.5475.70.981612660_atCB980017hypothetical protein LOC100244096-1e-39At1g20960emb1507 (embryo defective 1507)O.I.H.G.S.X.
0.5072.70.991608653_atCB975644hypothetical protein LOC100263217-5e+0At4g15020DNA binding / protein dimerizationO.I.H.G.S.X.
0.4868.80.991617655_atCB348593hypothetical protein LOC100262391-5e-10At3g16620ATTOC120O.I.H.G.S.X.
0.3751.70.991616823_atCF608764hypothetical protein LOC100257426-6e-7At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.
0.3548.50.991617406_s_atCF415339hypothetical protein LOC100266010-2e-8At3g07220transcriptional activator, putativeO.I.H.G.S.X.
0.3243.10.991613582_atCF204478.1hypothetical protein LOC100261825-6e-12At5g14170CHC1O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.096.7GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.094.2GSM147693Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation22Link to GEO
2.993.8GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.793.0GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO
2.692.5GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM287898Red soft berry B14 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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