CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619772_at

Gene name hypothetical protein LOC100260458
Homology with Arabidopsis Similar to At3g05070: - (HF=2e+0)

Module size 12 genes

NF 0.78

%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 0.96 1619772_at CF205273.1 hypothetical protein LOC100260458 - 2e+0 At3g05070 - O.I. H.G. S.X.
0.91 98.8 0.96 1615603_at CB346190 - - 2e-1 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial O.I. H.G. S.X.
0.80 93.6 0.97 1617280_s_at CF373668 hypothetical protein LOC100258720 - 5e-3 At2g27385 unknown protein O.I. H.G. S.X.
0.79 92.7 0.97 1611748_s_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) O.I. H.G. S.X.
0.76 91.5 0.96 1613573_at CF609267 hypothetical protein LOC100260045 - 6e-33 At1g53860 remorin family protein O.I. H.G. S.X.
0.76 91.5 0.95 1615118_at CF373171 hypothetical protein LOC100241584 - 1e+0 At4g36620 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.76 91.5 0.97 1607851_at CF415102 hypothetical protein LOC100266538 - 9e-2 At1g04660 glycine-rich protein O.I. H.G. S.X.
0.75 91.3 0.97 1615124_at CF514122 hypothetical protein LOC100258563 - 8e-5 At1g71691 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.74 91.0 0.96 1609418_s_at CF568955 hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538 - 4e+0 At5g35375 unknown protein O.I. H.G. S.X.
0.74 91.0 0.96 1613074_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) O.I. H.G. S.X.
0.67 87.9 0.96 1622481_x_at CF568921 - - 3e-2 At5g10430 AGP4 (ARABINOGALACTAN PROTEIN 4) O.I. H.G. S.X.
0.58 79.8 0.97 1615898_at CF404727 hypothetical protein LOC100247526 - 6e-2 At2g22100 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.7 93.0 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.7 93.0 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.2 89.9 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.0 88.2 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.0 88.2 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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