Co-expression analysis

Gene ID	1619766_at
Gene name
Homology with Arabidopsis	Similar to At1g77765: unknown protein (HF=2e+0)
Module size	41 genes
NF	0.28
%ile	39.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.99	100.0	0.90	1619766_at	CF513933	-	-	2e+0	At1g77765	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.95	1607964_s_at	BM437259	hypothetical protein LOC100257686	-	4e-1	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1609724_at	CF210650	hypothetical protein LOC100255332	-	1e-4	At3g56010	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.95	1611247_s_at	CF206748.1	similar to cytochrome f	-	2e+0	At1g65490	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.95	1615791_s_at	CA809329	hypothetical protein LOC100260183	-	2e-37	At2g45990	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.96	1620973_s_at	BQ798594	hypothetical protein LOC100265749	-	4e+0	At3g22415	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.96	1610664_s_at	CF213279	hypothetical protein LOC100259928	-	5e+0	At5g18661	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.95	1616688_s_at	CB342776	-	-	0	Atcg01050	-	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1611042_at	CB348049	hypothetical protein LOC100244390	-	9e-5	At3g20270	lipid-binding serum glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.93	1622811_at	CB006666	hypothetical protein LOC100240884	-	3e-11	At1g64900	CYP89A2 (CYTOCHROME P450 89A2)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1607986_at	CF606959	hypothetical protein LOC100252345	-	2e-49	At1g19920	APS2	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1616847_s_at	CA816751	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1617180_s_at	CA814162	hypothetical protein LOC100247137	-	2e-33	At3g56240	CCH (COPPER CHAPERONE)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1607325_at	CD717953	hypothetical protein LOC100266735	-	1e-9	At4g25910	NFU3	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1608768_at	CB341736	hypothetical protein LOC100267944	-	4e-1	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1613993_at	CB342665	hypothetical protein LOC100253257	-	2e-7	At1g55910	ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1614231_s_at	CB970079	hypothetical protein LOC100245250	-	3e-5	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1617027_at	CA809263	hypothetical protein LOC100258375	-	1e-1	At3g54900	CXIP1 (CAX INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1610176_at	CB341974	hypothetical protein LOC100266842	-	9e-16	At4g36810	GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1617928_at	CB340542	hypothetical protein LOC100247720	-	6e-2	At3g62910	APG3 (ALBINO AND PALE GREEN)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1615820_at	BQ796436	hypothetical protein LOC100263593	-	1e-6	At3g07270	GTP cyclohydrolase I	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1616440_at	CD798130	hypothetical protein LOC100240863	-	4e-3	At5g03900	-	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.95	1620226_at	CF372108	hypothetical protein LOC100254018	-	2e-24	At4g33460	ATNAP13	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1619200_at	CB005350	hypothetical protein LOC100264443	-	3e-17	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.97	1611605_s_at	CF371905	hypothetical protein LOC100257686	-	2e-3	At2g31050	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1616588_at	BQ792380	hypothetical protein LOC100268155	-	2e-20	At2g25870	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1607276_at	CF202469.1	-	-	1e-13	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1615802_at	CF518252	-	-	4e-1	At4g35200	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.96	1611993_at	CA809254	hypothetical protein LOC100246866	-	6e-32	At4g35000	APX3 (ASCORBATE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1610047_s_at	CF204118.1	-	-	1e-19	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.94	1621979_at	CB339366	hypothetical protein LOC100254010	-	7e-12	At1g62850	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1615304_at	CB341428	hypothetical protein LOC100252706	-	3e-11	At4g02790	GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1614432_at	BM437777	hypothetical protein LOC100256290	-	5e-60	At2g04270	RNEE/G (RNASE E/G-LIKE)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1621271_at	CA817593	hypothetical protein LOC100244294	-	2e+0	At5g28931	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1615149_at	CD009120	hypothetical protein LOC100248175	-	4e+0	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1617988_at	CA817224	hypothetical protein LOC100243747	-	2e-4	At2g35410	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.93	1613092_at	CF511904	-	-	6e+0	At3g24110	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.96	1615857_s_at	BQ797394	hypothetical protein LOC100267827	-	2e-53	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.91	1615092_at	CB349360	similar to ring domain containing protein	-	1e-8	At4g03510	RMA1	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.92	1612272_at	CD715200	hypothetical protein LOC100264087	-	5e-71	At1g43670	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.0	88.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.8	86.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.8	86.0	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.8	86.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.7	84.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage