Co-expression analysis

Gene ID	1619728_at
Gene name
Homology with Arabidopsis	Similar to At3g12160: RABA4D (RAB GTPASE HOMOLOG A4D) (HF=1e-35)
Module size	6 genes
NF	0.05
%ile	10.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.89	1619728_at	BM437855	-	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1620717_at	BQ799683	hypothetical protein LOC100255378	-	3e-15	At5g58430	ATEXO70B1 (exocyst subunit EXO70 family protein B1)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.97	1606436_s_at	CB007992	hypothetical protein LOC100243286	-	7e-4	At4g30430	TET9 (TETRASPANIN9)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.97	1606505_at	CB970568	hypothetical protein LOC100257948	-	3e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.97	1618802_s_at	CF205022.1	hypothetical protein LOC100264326	-	9e-4	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.97	1620463_at	CD013332	hypothetical protein LOC100265246	-	1e+0	At2g27970	CKS2 (CDK-subunit 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.5	99.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.2	98.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.8	97.8	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.6	83.3	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50

Inter-species module comparison

A co-expression module including the maize gene, Zm.14385.1.S1_at, orthologous to the query gene, 1619728_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	Zm.14385.1.S1_at	At3g12160	hypothetical protein LOC100272235	-	1e-23	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.2245.1.A1_at	At3g12160	pre-mRNA-splicing factor cwc15	-	6e-7	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.3869.1.A1_at	At3g12160	protein YIF1A	-	3e-21	At1g30890	integral membrane HRF1 family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.3895.2.A1_at	At3g12160	chlorophyll a-b binding protein 4	-	2e-12	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.6870.1.A1_at	At3g12160	dihydroflavonol-4-reductase	-	2e-11	At4g16430	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.13073.1.S1_at	At3g12160	-	-	6e-1	At1g16640	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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