Co-expression analysis

Gene ID	1619728_at
Gene name
Homology with Arabidopsis	Similar to At3g12160: RABA4D (RAB GTPASE HOMOLOG A4D) (HF=1e-35)
Module size	6 genes
NF	0.05
%ile	10.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.89	1619728_at	BM437855	-	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1620717_at	BQ799683	hypothetical protein LOC100255378	-	3e-15	At5g58430	ATEXO70B1 (exocyst subunit EXO70 family protein B1)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.97	1606436_s_at	CB007992	hypothetical protein LOC100243286	-	7e-4	At4g30430	TET9 (TETRASPANIN9)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.97	1606505_at	CB970568	hypothetical protein LOC100257948	-	3e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.97	1618802_s_at	CF205022.1	hypothetical protein LOC100264326	-	9e-4	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.97	1620463_at	CD013332	hypothetical protein LOC100265246	-	1e+0	At2g27970	CKS2 (CDK-subunit 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.5	99.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.2	98.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.8	97.8	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.6	83.3	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50

Inter-species module comparison

A co-expression module including the barley gene, Contig11759_at, orthologous to the query gene, 1619728_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	Contig11759_at	At3g12160	-	-	1e-5	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig12727_at	At3g12160	-	-	1e-7	At4g02840	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig16492_at	At3g12160	-	-	7e+0	At5g20630	GER3 (GERMIN 3)	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig13188_at	At3g12160	-	-	1e-4	At5g58540	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig6101_at	At3g12160	-	-	1e-10	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig24822_at	At3g12160	-	-	6e+0	At5g05120	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig10107_at	At3g12160	-	-	2e-1	At1g17070	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig25041_at	At3g12160	-	-	4e+0	At2g17770	ATBZIP27	O.I.	H.G.	S.X.	Please select
0.48	63.2	HU14M07u_s_at	At3g12160	-	-	1e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig15036_at	At3g12160	-	-	1e-1	At3g07090	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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