Co-expression analysis

Gene ID	1619724_at
Gene name
Homology with Arabidopsis	Similar to At5g27640: TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) (HF=1e-23)
Module size	6 genes
NF	0.41
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	66.5	0.95	1619724_at	CA818237	-	-	1e-23	At5g27640	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1612675_at	CK136926.1	-	-	2e-82	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1614064_at	BM436771	-	-	7e-5	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1611655_at	CB913871	-	-	3e-32	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1617112_at	CF568911	-	-	7e-14	At5g14250	COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13)	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1613291_at	CF972323.1	-	-	4e-4	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	98.2	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
4.0	96.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.2	94.9	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.2	94.9	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
3.1	94.6	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.9	93.8	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
2.5	91.9	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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