Co-expression analysis

Gene ID 1619721_at
Gene name hypothetical protein LOC100245970
Homology with ArabidopsisSimilar to At1g77750: 30S ribosomal protein S13, chloroplast, putative (HF=2e+0)
Module size 9 genes
NF 0.15
%ile 23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.90.931619721_atCB343549hypothetical protein LOC100245970-2e+0At1g7775030S ribosomal protein S13, chloroplast, putativeO.I.H.G.S.X.
0.3141.30.971609571_atBQ795107hypothetical protein LOC100258119-6e-12At4g36860zinc ion bindingO.I.H.G.S.X.
0.2937.70.951622318_atCF516494similar to putative anti-virus transcriptional factor-5e-3At3g48070protein binding / zinc ion bindingO.I.H.G.S.X.
0.2530.50.961618046_atCD717926hypothetical protein LOC100258817-7e-33At1g49670NQRO.I.H.G.S.X.
0.1920.90.951607359_s_atBQ797168hypothetical protein LOC100247960 /// hypothetical protein LOC100253084 /// hypothetical protein LOC100256782-1e+0At5g51845-O.I.H.G.S.X.
0.1819.40.961621263_atCA818600hypothetical protein LOC100267999-3e-8At2g45910protein kinase family protein / U-box domain-containing proteinO.I.H.G.S.X.
0.1718.20.951618045_atCF216119hypothetical protein LOC100243133-7e-2At1g69760unknown proteinO.I.H.G.S.X.
0.077.80.961619087_s_atBQ796971hypothetical protein LOC100264699-3e-10At5g51020CRL (CRUMPLED LEAF)O.I.H.G.S.X.
0.045.20.951614368_a_atCB979921hypothetical protein LOC100266601 /// hypothetical protein LOC100260276-4e+0At1g35440CYCT1O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.698.4GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.996.6GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.796.2GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.993.8GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.793.0GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.591.9GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.591.9GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436396V. riparia (VR, PI588259) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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