Co-expression analysis

Gene ID	1619717_at
Gene name	hypothetical protein LOC100255647
Homology with Arabidopsis	Similar to At5g54190: PORA (HF=1e-67)
Module size	13 genes
NF	0.46
%ile	68.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.90	1619717_at	CF210684	hypothetical protein LOC100255647	-	1e-67	At5g54190	PORA	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.95	1609122_at	CB003768	hypothetical protein LOC100267142	-	7e-27	At2g04530	CPZ	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.93	1616118_at	CD006870	hypothetical protein LOC100246658	-	8e-1	At5g03220	transcriptional co-activator-related	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.95	1606604_at	CF373854	hypothetical protein LOC100241081	-	2e-6	At2g39670	radical SAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.93	1620880_at	CB002256	hypothetical protein LOC100267434	-	3e-1	At3g15110	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.93	1619902_at	CD006870	-	-	8e-1	At5g03220	transcriptional co-activator-related	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.92	1622299_s_at	CK136935.1	hypothetical protein LOC100255647	-	7e-10	At5g54190	PORA	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.93	1607621_at	CF406023	hypothetical protein LOC100259213	-	2e-5	At5g13400	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.96	1620411_at	CB343828	hypothetical protein LOC100248931	-	2e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1611466_at	CF372402	hypothetical protein LOC100253536	-	7e-26	At4g19100	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1620736_a_at	CD714912	hypothetical protein LOC100255654	-	3e-39	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.93	1621140_at	CB970690	hypothetical protein LOC100266085	-	2e+0	At3g03930	protein kinase-related	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.93	1612100_at	CF215638	hypothetical protein LOC100248200	-	4e+0	At5g03840	TFL1 (TERMINAL FLOWER 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	89.1	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
1.6	83.3	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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