Co-expression analysis

Gene ID 1619717_at
Gene name hypothetical protein LOC100255647
Homology with ArabidopsisSimilar to At5g54190: PORA (HF=1e-67)
Module size 13 genes
NF 0.46
%ile 68.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8695.10.901619717_atCF210684hypothetical protein LOC100255647-1e-67At5g54190PORAO.I.H.G.S.X.
0.5679.40.951609122_atCB003768hypothetical protein LOC100267142-7e-27At2g04530CPZO.I.H.G.S.X.
0.5577.30.931616118_atCD006870hypothetical protein LOC100246658-8e-1At5g03220transcriptional co-activator-relatedO.I.H.G.S.X.
0.5273.90.951606604_atCF373854hypothetical protein LOC100241081-2e-6At2g39670radical SAM domain-containing proteinO.I.H.G.S.X.
0.4868.80.931620880_atCB002256hypothetical protein LOC100267434-3e-1At3g15110unknown proteinO.I.H.G.S.X.
0.4868.80.931619902_atCD006870--8e-1At5g03220transcriptional co-activator-relatedO.I.H.G.S.X.
0.4464.10.921622299_s_atCK136935.1hypothetical protein LOC100255647-7e-10At5g54190PORAO.I.H.G.S.X.
0.4464.10.931607621_atCF406023hypothetical protein LOC100259213-2e-5At5g13400proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.4260.10.961620411_atCB343828hypothetical protein LOC100248931-2e-1At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.
0.4057.70.951611466_atCF372402hypothetical protein LOC100253536-7e-26At4g19100unknown proteinO.I.H.G.S.X.
0.3548.50.961620736_a_atCD714912hypothetical protein LOC100255654-3e-39At1g11430plastid developmental protein DAG, putativeO.I.H.G.S.X.
0.3039.40.931621140_atCB970690hypothetical protein LOC100266085-2e+0At3g03930protein kinase-relatedO.I.H.G.S.X.
0.2734.00.931612100_atCF215638hypothetical protein LOC100248200-4e+0At5g03840TFL1 (TERMINAL FLOWER 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.189.1GSM436351Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436365Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436390V. riparia (VR, PI588259) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436361Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436367Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM287881Green soft berry B10 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.683.3GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.683.3GSM147695Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation24Link to GEO
1.683.3GSM436422V. riparia (VR, PI588259) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage