Co-expression analysis

Gene ID	1619680_at
Gene name	hypothetical protein LOC100254201
Homology with Arabidopsis	Similar to At3g14480: glycine/proline-rich protein (HF=2e+0)
Module size	6 genes
NF	0.48
%ile	71.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1619680_at	CB975224	hypothetical protein LOC100254201	-	2e+0	At3g14480	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1610665_s_at	BQ798907	hypothetical protein LOC100253813	-	7e-22	At2g16940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.99	1622061_at	CD798716	hypothetical protein LOC100264484	-	3e-10	At1g59820	ALA3 (Aminophospholipid ATPase3)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1622769_at	BQ793816	hypothetical protein LOC100243302	-	1e-22	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.99	1612660_at	CB980017	hypothetical protein LOC100244096	-	1e-39	At1g20960	emb1507 (embryo defective 1507)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.99	1616079_at	CD801867	hypothetical LOC100255014	-	3e-21	At4g03340	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	97.3	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
4.0	96.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.9	96.6	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
3.9	96.6	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.7	96.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.6	96.0	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.6	96.0	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
3.3	95.2	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
3.2	94.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.0	94.2	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage