Co-expression analysis

Gene ID	1619642_at
Gene name	hypothetical protein LOC100241575
Homology with Arabidopsis	Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=3e-28)
Module size	6 genes
NF	0.63
%ile	89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.96	1619642_at	CF512453	hypothetical protein LOC100241575	-	3e-28	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.96	1607732_at	AF020709.1	chalcone synthase	-	7e-60	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1612134_at	CF204393.1	similar to anthocyanidin reductase	-	6e-3	At2g02400	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.96	1609765_s_at	CB007712	leucoanthocyanidin dioxygenase	-	6e-20	At4g22880	LDOX (LEUCOANTHOCYANIDIN DIOXYGENASE)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1620675_at	CB969894	dihydroflavonol reductase	-	8e-13	At5g42800	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1606663_at	CB981710	chalcone synthase	-	5e-48	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.0	88.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.9	87.2	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.9	87.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.9	87.2	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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