CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619641_at

Gene name
Homology with Arabidopsis Similar to Atcg00040: - (HF=7e-98)

Module size 15 genes

NF 0.63

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.93 99.2 0.96 1619641_at CB339547 - - 7e-98 Atcg00040 - O.I. H.G. S.X.
0.74 91.0 0.97 1608628_at CF074739 hypothetical protein LOC100262894 - 1e-22 At3g01480 CYP38 (cyclophilin 38) O.I. H.G. S.X.
0.69 88.3 0.97 1615470_at CD720380 similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome - 1e-2 At1g05190 emb2394 (embryo defective 2394) O.I. H.G. S.X.
0.69 88.3 0.98 1615609_at CB971917 hypothetical protein LOC100268043 - 1e-11 At3g25920 RPL15 O.I. H.G. S.X.
0.67 87.9 0.97 1610549_at CF405661 - - 1e-9 At4g01690 PPOX O.I. H.G. S.X.
0.67 87.9 0.98 1607466_at CF413978 similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome - 2e-17 At1g05190 emb2394 (embryo defective 2394) O.I. H.G. S.X.
0.64 84.7 0.98 1620684_at CA811105 hypothetical protein LOC100244408 - 5e-10 At1g64510 ribosomal protein S6 family protein O.I. H.G. S.X.
0.63 84.3 0.95 1621184_at CD009048 - - 3e+1 At3g02555 unknown protein O.I. H.G. S.X.
0.63 84.3 0.97 1613768_at CD005877 hypothetical protein LOC100252130 - 2e-11 At3g14930 HEME1 O.I. H.G. S.X.
0.55 77.3 0.97 1621399_s_at CF372346 - - 3e-13 At3g63190 RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) O.I. H.G. S.X.
0.55 77.3 0.98 1610716_at CF211147 hypothetical protein LOC100265925 - 5e-16 At3g15190 chloroplast 30S ribosomal protein S20, putative O.I. H.G. S.X.
0.54 75.7 0.98 1614655_at CB969062 hypothetical protein LOC100267459 - 2e-61 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) O.I. H.G. S.X.
0.53 75.2 0.98 1606797_at CD714405 similar to 50S ribosomal protein L17, chloroplastic - 3e-8 At3g54210 ribosomal protein L17 family protein O.I. H.G. S.X.
0.50 72.7 0.98 1617061_s_at CD003896 hypothetical protein LOC100243475 - 2e-15 At5g55220 trigger factor type chaperone family protein O.I. H.G. S.X.
0.41 58.7 0.97 1607287_a_at CA817984 hypothetical protein LOC100248273 - 3e-16 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.0 96.7 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4 95.5 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.3 95.2 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0 94.2 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4 91.3 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
2.3 90.7 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.1 89.1 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.0 88.2 GSM147733 Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation 62
1.9 87.2 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9 87.2 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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