Co-expression analysis

Gene ID 1619620_at
Gene name hypothetical protein LOC100256257
Homology with ArabidopsisSimilar to At3g22380: TIC (TIME FOR COFFEE) (HF=2e-1)
Module size 9 genes
NF 0.46
%ile 69.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.80.981619620_atCB348520hypothetical protein LOC100256257-2e-1At3g22380TIC (TIME FOR COFFEE)O.I.H.G.S.X.
0.7189.50.981612962_atBQ794726--2e-2At5g3553040S ribosomal protein S3 (RPS3C)O.I.H.G.S.X.
0.6787.90.991612660_atCB980017hypothetical protein LOC100244096-1e-39At1g20960emb1507 (embryo defective 1507)O.I.H.G.S.X.
0.5779.80.981618340_atCF517343--4e+0At4g25040integral membrane family proteinO.I.H.G.S.X.
0.5072.70.991619680_atCB975224hypothetical protein LOC100254201-2e+0At3g14480glycine/proline-rich proteinO.I.H.G.S.X.
0.4260.10.981620494_atCF414991--1e+0At5g55190RAN3 (RAN GTPASE 3)O.I.H.G.S.X.
0.3954.90.981611458_atCF207715hypothetical protein LOC100243644-2e-18At2g35530bZIP transcription factor family proteinO.I.H.G.S.X.
0.3243.10.981619784_atCF209299hypothetical protein LOC100248174-2e-9At5g23450ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)O.I.H.G.S.X.
0.2937.70.981622061_atCD798716hypothetical protein LOC100264484-3e-10At1g59820ALA3 (Aminophospholipid ATPase3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.597.5GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.796.2GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.094.2GSM287898Red soft berry B14 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.390.7GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.289.9GSM287896Pink soft berry C27 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.289.9GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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