Co-expression analysis

Gene ID 1619610_at
Gene name hypothetical protein LOC100262106
Homology with ArabidopsisSimilar to At5g56660: ILL2 (HF=4e-20)
Module size 6 genes
NF 0.11
%ile 18.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5072.70.911619610_atCB008850hypothetical protein LOC100262106-4e-20At5g56660ILL2O.I.H.G.S.X.
0.3141.30.921610125_atCF209614--1e-3At2g41540GPDHC1O.I.H.G.S.X.
0.2937.70.921611872_atCF404465hypothetical protein LOC100266256-8e-50At2g26640KCS11 (3-KETOACYL-COA SYNTHASE 11)O.I.H.G.S.X.
0.2530.50.901617959_s_atCA809016hypothetical protein LOC100243044-6e-12At3g05550hypoxia-responsive family proteinO.I.H.G.S.X.
0.1313.30.931610143_atCF405294hypothetical protein LOC100264398-1e+0At3g27630unknown proteinO.I.H.G.S.X.
0.045.20.891610328_atCD800027hypothetical protein LOC100263661-6e-22At3g16857ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.796.2GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.696.0GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
3.595.7GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.194.6GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO
2.893.4GSM147720Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation49Link to GEO
2.793.0GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.692.5GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.692.5GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
2.591.9GSM147710Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation39Link to GEO
2.491.3GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.32773.1.S1_at, orthologous to the query gene, 1619610_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6786.1GmaAffx.32773.1.S1_atAt5g56660--1e-8At5g56650ILL1O.I.H.G.S.X.
0.7790.3GmaAffx.57967.1.S1_atAt5g56660--9e-1At1g50470-O.I.H.G.S.X.
0.5576.3Gma.4647.1.S1_atAt5g56660--4e-32At5g64300ATGCHO.I.H.G.S.X.
0.5576.3GmaAffx.9145.1.S1_s_atAt5g56660--4e+0At3g53420PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)O.I.H.G.S.X.
0.5374.2Gma.4400.1.S1_atAt5g56660WRKY53-4e-32At5g13080WRKY75O.I.H.G.S.X.
0.5071.7GmaAffx.87395.1.S1_atAt5g56660--2e-8At5g58970ATUCP2 (UNCOUPLING PROTEIN 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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