Co-expression analysis

Gene ID	1619598_at
Gene name	hypothetical protein LOC100249152
Homology with Arabidopsis	Similar to At4g03170: DNA binding (HF=1e+0)
Module size	6 genes
NF	0.33
%ile	48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.97	1619598_at	BQ792469	hypothetical protein LOC100249152	-	1e+0	At4g03170	DNA binding	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1612787_at	BQ798474	hypothetical protein LOC100241927	-	4e+0	At5g58790	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1619096_at	CB969616	hypothetical protein LOC100262646	-	1e-7	At4g24270	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1614808_at	BQ792403	hypothetical protein LOC100253735	-	2e-15	At1g53280	DJ-1 family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1620256_at	AF021808.1	sucrose transporter-like	-	2e-29	At1g09960	SUT4 (SUCROSE TRANSPORTER 4)	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1613293_at	CF518513	hypothetical protein LOC100251356	-	5e-10	At4g11560	bromo-adjacent homology (BAH) domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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