CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619578_at

Gene name hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392
Homology with Arabidopsis Similar to At3g14620: CYP72A8 (HF=6e-3)

Module size 6 genes

NF 0.64

%ile 90.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.90 1619578_at CB342051 hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392 - 6e-3 At3g14620 CYP72A8 O.I. H.G. S.X.
0.77 92.3 0.89 1609184_at CB342124 hypothetical protein LOC100254366 - 7e-6 At3g14640 CYP72A10 O.I. H.G. S.X.
0.73 90.8 0.87 1616555_s_at CB343780 - - 1e+1 At4g35165 unknown protein O.I. H.G. S.X.
0.50 72.7 0.92 1614381_at CD713830 - - 9e+0 At5g54930 AT hook motif-containing protein O.I. H.G. S.X.
0.43 61.5 0.88 1606919_at CB342051 - - 6e-3 At3g14620 CYP72A8 O.I. H.G. S.X.
0.35 48.5 0.90 1608907_s_at CA809004 hypothetical protein LOC100260266 - 1e-30 At1g60470 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.90	1617035_s_at	CF205538.1	hypothetical protein LOC100260266	-	1e-10	At2g47180	AtGolS1 (Arabidopsis thaliana galactinol synthase 1)	O.I.	H.G.	S.X.
0.50	72.7	0.85	1608868_at	AY427142.1	hypothetical protein LOC100252877	-	2e-8	At2g37710	RLK (receptor lectin kinase)	O.I.	H.G.	S.X.
0.48	68.8	0.83	1617336_at	CB342674	hypothetical protein LOC100262536	-	2e-4	At2g30900	unknown protein	O.I.	H.G.	S.X.
0.36	50.7	0.89	1616312_at	CD720049	hypothetical protein LOC100241199	-	1e-4	At2g22860	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	O.I.	H.G.	S.X.
0.32	43.1	0.85	1610194_at	CA817595	hypothetical protein LOC100259039	-	2e-8	At2g44890	CYP704A1	O.I.	H.G.	S.X.
0.29	37.7	0.93	1616248_at	CF203724.1	-	-	5e+0	At3g47430	PEX11B	O.I.	H.G.	S.X.
0.27	34.0	0.86	1613500_at	CA809250	-	-	2e-2	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	O.I.	H.G.	S.X.
0.27	34.0	0.74	1612923_at	CB004152	-	-	5e+0	At5g11970	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.71	1618392_s_at	CF202056.1	-	-	2e+1	At5g37480	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.74	1618893_at	CF204978.1	-	-	4e-1	At2g31940	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.84	1610415_at	CA816043	hypothetical protein LOC100243672	-	1e-7	At2g45560	CYP76C1	O.I.	H.G.	S.X.
0.25	30.5	0.72	1607103_x_at	CF202056.1	-	-	2e+1	At5g37480	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 97.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.8 93.4 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
2.7 93.0 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.4 91.3 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.4 91.3 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.2 89.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.2 89.9 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
2.1 89.1 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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