Co-expression analysis

Gene ID	1619578_at
Gene name	hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392
Homology with Arabidopsis	Similar to At3g14620: CYP72A8 (HF=6e-3)
Module size	6 genes
NF	0.64
%ile	90.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.90	1619578_at	CB342051	hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392	-	6e-3	At3g14620	CYP72A8	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.89	1609184_at	CB342124	hypothetical protein LOC100254366	-	7e-6	At3g14640	CYP72A10	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.87	1616555_s_at	CB343780	-	-	1e+1	At4g35165	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.92	1614381_at	CD713830	-	-	9e+0	At5g54930	AT hook motif-containing protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.88	1606919_at	CB342051	-	-	6e-3	At3g14620	CYP72A8	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.90	1608907_s_at	CA809004	hypothetical protein LOC100260266	-	1e-30	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.7	97.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.8	93.4	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.7	93.0	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.4	91.3	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.4	91.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.2	89.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.1	89.1	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70

Inter-species module comparison

A co-expression module including the maize gene, Zm.16259.1.A1_x_at, orthologous to the query gene, 1619578_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	Zm.16259.1.A1_x_at	At3g14620	hypothetical protein LOC100273269	-	1e-6	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.6113.1.A1_at	At3g14620	-	-	7e-2	At4g22745	MBD1	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.10656.1.A1_at	At3g14620	hypothetical protein LOC100216802	-	3e+0	At4g25570	ACYB-2	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.2979.1.S1_at	At3g14620	trafficking protein particle complex protein 2	-	2e-12	At1g80500	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.6787.1.A1_a_at	At3g14620	hypothetical protein LOC100274407 /// UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.13232.1.S1_at	At3g14620	tyrosine/DOPA decarboxylase 2	-	9e-1	At2g04630	NRPB6B	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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