Co-expression analysis

Gene ID 1619578_at
Gene name hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392
Homology with ArabidopsisSimilar to At3g14620: CYP72A8 (HF=6e-3)
Module size 6 genes
NF 0.64
%ile 90.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.901619578_atCB342051hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392-6e-3At3g14620CYP72A8O.I.H.G.S.X.
0.7792.30.891609184_atCB342124hypothetical protein LOC100254366-7e-6At3g14640CYP72A10O.I.H.G.S.X.
0.7390.80.871616555_s_atCB343780--1e+1At4g35165unknown proteinO.I.H.G.S.X.
0.5072.70.921614381_atCD713830--9e+0At5g54930AT hook motif-containing proteinO.I.H.G.S.X.
0.4361.50.881606919_atCB342051--6e-3At3g14620CYP72A8O.I.H.G.S.X.
0.3548.50.901608907_s_atCA809004hypothetical protein LOC100260266-1e-30At1g60470AtGolS4 (Arabidopsis thaliana galactinol synthase 4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.797.7GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.893.4GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
2.793.0GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.491.3GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO
2.491.3GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
2.289.9GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
2.289.9GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
2.189.1GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.218777.1.S1_s_at, orthologous to the query gene, 1619578_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6388.1PtpAffx.218777.1.S1_s_atAt3g14620hypothetical protein-7e-6At5g05770WOX7 (WUSCHEL-RELATED HOMEOBOX 7)O.I.H.G.S.X.
0.2747.1PtpAffx.2548.1.A1_atAt3g14620--4e-12At1g76690OPR2O.I.H.G.S.X.
0.2136.5PtpAffx.140744.1.A1_atAt3g14620--8e-1At5g07880SNAP29O.I.H.G.S.X.
0.2136.5PtpAffx.210101.1.S1_atAt3g14620auxin efflux carrier family protein-2e-6At1g20925auxin efflux carrier family proteinO.I.H.G.S.X.
0.2034.6PtpAffx.225262.1.S1_s_atAt3g14620BED finger-nbs-lrr resistance protein /// hypothetical protein-2e-1At2g21780unknown proteinO.I.H.G.S.X.
0.1932.7PtpAffx.158291.1.A1_s_atAt3g14620hypothetical protein-3e+0At5g65320basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.1729.1Ptp.3141.1.S1_atAt3g14620--5e-1At2g32820-O.I.H.G.S.X.
0.1729.1PtpAffx.91502.1.S1_atAt3g14620hypothetical protein-1e-1At1g17200integral membrane family proteinO.I.H.G.S.X.
0.1729.1PtpAffx.134586.1.A1_atAt3g14620hypothetical protein-1e-3At3g63470scpl40 (serine carboxypeptidase-like 40)O.I.H.G.S.X.
0.1118.1PtpAffx.224659.1.S1_atAt3g14620hypothetical protein-2e-14At1g69170squamosa promoter-binding protein-like 6 (SPL6)O.I.H.G.S.X.
0.1118.1PtpAffx.212197.1.S1_atAt3g14620hypothetical protein-3e+0At4g12340-O.I.H.G.S.X.
0.1016.3PtpAffx.44007.2.A1_atAt3g14620type-a response regulator-5e-10At3g48100ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)O.I.H.G.S.X.
0.069.8PtpAffx.127543.1.A1_atAt3g14620--2e+0At4g23590aminotransferase class I and II family proteinO.I.H.G.S.X.
0.046.9PtpAffx.203674.1.S1_atAt3g14620hypothetical protein-3e-2At3g50690leucine-rich repeat family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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