CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619578_at

Gene name hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392
Homology with Arabidopsis Similar to At3g14620: CYP72A8 (HF=6e-3)

Module size 6 genes

NF 0.64

%ile 90.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.90 1619578_at CB342051 hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392 - 6e-3 At3g14620 CYP72A8 O.I. H.G. S.X.
0.77 92.3 0.89 1609184_at CB342124 hypothetical protein LOC100254366 - 7e-6 At3g14640 CYP72A10 O.I. H.G. S.X.
0.73 90.8 0.87 1616555_s_at CB343780 - - 1e+1 At4g35165 unknown protein O.I. H.G. S.X.
0.50 72.7 0.92 1614381_at CD713830 - - 9e+0 At5g54930 AT hook motif-containing protein O.I. H.G. S.X.
0.43 61.5 0.88 1606919_at CB342051 - - 6e-3 At3g14620 CYP72A8 O.I. H.G. S.X.
0.35 48.5 0.90 1608907_s_at CA809004 hypothetical protein LOC100260266 - 1e-30 At1g60470 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 97.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.8 93.4 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
2.7 93.0 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.4 91.3 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.4 91.3 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.2 89.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.2 89.9 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
2.1 89.1 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70

Inter-species module comparison

A co-expression module including the rice gene, Os01g0627900, orthologous to the query gene, 1619578_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.28 31.1 Os01g0627900 At3g14620 - Cytochrome P450 monooxygenase CYP72A5 (Fragment) 9e-4 At1g17060 CYP72C1 (CYTOCHROME P450 72C1) O.I. H.G. S.X.
0.55 73.7 Os08g0112300 At3g14620 - Transferase family protein 8e-1 At3g03920 Gar1 RNA-binding region family protein O.I. H.G. S.X.
0.33 38.8 Os04g0209200 At3g14620 - Glutathione-conjugate transporter AtMRP4 2e-6 At3g62700 ATMRP10 O.I. H.G. S.X.
0.30 32.7 Os02g0179600 At3g14620 - Conserved hypothetical protein 7e-2 At5g43400 unknown protein O.I. H.G. S.X.
0.27 27.5 Os09g0444900 At3g14620 - - 8e-3 At1g55240 unknown protein O.I. H.G. S.X.
0.25 24.1 Os07g0416900 At3g14620 - Omega-6 fatty acid desaturase, endoplasmicreticulum isozyme 2 (EC 1.14.19.-) 7e-1 At4g20690 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage