CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619578_at

Gene name hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392
Homology with Arabidopsis Similar to At3g14620: CYP72A8 (HF=6e-3)

Module size 6 genes

NF 0.64

%ile 90.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.90 1619578_at CB342051 hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392 - 6e-3 At3g14620 CYP72A8 O.I. H.G. S.X.
0.77 92.3 0.89 1609184_at CB342124 hypothetical protein LOC100254366 - 7e-6 At3g14640 CYP72A10 O.I. H.G. S.X.
0.73 90.8 0.87 1616555_s_at CB343780 - - 1e+1 At4g35165 unknown protein O.I. H.G. S.X.
0.50 72.7 0.92 1614381_at CD713830 - - 9e+0 At5g54930 AT hook motif-containing protein O.I. H.G. S.X.
0.43 61.5 0.88 1606919_at CB342051 - - 6e-3 At3g14620 CYP72A8 O.I. H.G. S.X.
0.35 48.5 0.90 1608907_s_at CA809004 hypothetical protein LOC100260266 - 1e-30 At1g60470 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 97.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.8 93.4 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
2.7 93.0 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.4 91.3 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.4 91.3 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.2 89.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.2 89.9 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
2.1 89.1 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.25724.3.S1_at, orthologous to the query gene, 1619578_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.9 GmaAffx.25724.3.S1_at At3g14620 - - 6e-2 At3g14680 CYP72A14 O.I. H.G. S.X.
0.67 86.1 GmaAffx.53002.1.S1_at At3g14620 - - 6e-8 At5g49730 ATFRO6 (FERRIC REDUCTION OXIDASE 6) O.I. H.G. S.X.
0.65 83.8 GmaAffx.80460.1.S1_at At3g14620 - - 3e+0 At1g21500 unknown protein O.I. H.G. S.X.
0.56 78.2 GmaAffx.44426.1.S1_at At3g14620 - - 6e-8 At2g30950 VAR2 (VARIEGATED 2) O.I. H.G. S.X.
0.55 76.3 Gma.10896.2.S1_at At3g14620 - - 2e-25 At2g24270 ALDH11A3 O.I. H.G. S.X.
0.51 72.3 GmaAffx.83362.1.S1_at At3g14620 - - 2e-9 At5g20140 SOUL heme-binding family protein O.I. H.G. S.X.
0.50 71.7 Gma.15039.2.S1_at At3g14620 - - 1e+1 At5g12140 ATCYS1 (A. thaliana cystatin-1) O.I. H.G. S.X.
0.48 67.7 Gma.12578.1.S1_at At3g14620 - - 3e-44 At5g58140 PHOT2 (PHOTOTROPIN 2) O.I. H.G. S.X.
0.48 67.7 GmaAffx.12286.2.S1_at At3g14620 - - 1e-11 At5g38510 rhomboid family protein O.I. H.G. S.X.
0.47 66.6 GmaAffx.67157.1.S1_at At3g14620 - - 3e-16 At2g30950 VAR2 (VARIEGATED 2) O.I. H.G. S.X.
0.46 65.5 Gma.1164.2.S1_at At3g14620 - - 1e-10 At5g49730 ATFRO6 (FERRIC REDUCTION OXIDASE 6) O.I. H.G. S.X.
0.37 51.7 GmaAffx.32901.2.S1_at At3g14620 - - 5e-2 At5g62500 ATEB1B (END BINDING PROTEIN 1B) O.I. H.G. S.X.
0.37 51.7 GmaAffx.68071.1.S1_at At3g14620 - - 1e-1 At1g09530 PIF3 (PHYTOCHROME INTERACTING FACTOR 3) O.I. H.G. S.X.
0.34 47.2 Gma.13330.2.S1_at At3g14620 - - 8e-1 At5g57040 lactoylglutathione lyase family protein / glyoxalase I family protein O.I. H.G. S.X.
0.29 39.0 GmaAffx.64748.1.S1_at At3g14620 - - 6e-2 At2g16210 transcriptional factor B3 family protein O.I. H.G. S.X.
0.28 39.0 Gma.18103.1.A1_at At3g14620 - - 1e+0 At2g02290 NLI interacting factor (NIF) family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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