CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619578_at

Gene name hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392
Homology with Arabidopsis Similar to At3g14620: CYP72A8 (HF=6e-3)

Module size 6 genes

NF 0.64

%ile 90.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.90 1619578_at CB342051 hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392 - 6e-3 At3g14620 CYP72A8 O.I. H.G. S.X.
0.77 92.3 0.89 1609184_at CB342124 hypothetical protein LOC100254366 - 7e-6 At3g14640 CYP72A10 O.I. H.G. S.X.
0.73 90.8 0.87 1616555_s_at CB343780 - - 1e+1 At4g35165 unknown protein O.I. H.G. S.X.
0.50 72.7 0.92 1614381_at CD713830 - - 9e+0 At5g54930 AT hook motif-containing protein O.I. H.G. S.X.
0.43 61.5 0.88 1606919_at CB342051 - - 6e-3 At3g14620 CYP72A8 O.I. H.G. S.X.
0.35 48.5 0.90 1608907_s_at CA809004 hypothetical protein LOC100260266 - 1e-30 At1g60470 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.7 97.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.8 93.4 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
2.7 93.0 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.4 91.3 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.4 91.3 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.2 89.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.2 89.9 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
2.1 89.1 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g14620, orthologous to the query gene, 1619578_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.26 24.4 At3g14620 820690 CYP72A8 putative cytochrome P450 O.I. H.G. S.X.
0.40 50.8 At2g31880 817746 leucine-rich repeat transmembrane protein kinase, putative Encodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs. O.I. H.G. S.X.
0.40 50.8 At5g60900 836211 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) Encodes a receptor-like protein kinase. O.I. H.G. S.X.
0.29 30.3 At1g08450 837365 CRT3 (CALRETICULIN 3) Encodes calreticulin CRT3. O.I. H.G. S.X.
0.29 30.3 At1g66880 843006 serine/threonine protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.22 17.5 At2g46430 819251 ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance O.I. H.G. S.X.
0.09 2.8 At2g02930 814822 ATGSTF3 (GLUTATHIONE S-TRANSFERASE F3) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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