Co-expression analysis

Gene ID	1619530_at
Gene name
Homology with Arabidopsis	Similar to At5g58300: leucine-rich repeat transmembrane protein kinase, putative (HF=2e-26)
Module size	6 genes
NF	0.04
%ile	10.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.92	1619530_at	CF568823	-	-	2e-26	At5g58300	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.94	1617934_at	BM437104	-	-	1e-76	At2g34590	transketolase family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1619188_at	CF204375.1	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1622228_at	CF568837	-	-	4e-68	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.93	1617721_at	CF568847	-	-	1e-76	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.01	2.1	0.94	1613521_at	CF514518	metallothionein	-	5e-19	At3g09390	MT2A (METALLOTHIONEIN 2A)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	99.1	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.1	98.7	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
6.0	98.7	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.5	98.4	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.6	97.6	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.5	97.5	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.5	95.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.1	89.1	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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