Co-expression analysis

Gene ID	1619503_at
Gene name	hypothetical protein LOC100254346
Homology with Arabidopsis	Similar to At5g23120: HCF136 (HF=2e-124)
Module size	6 genes
NF	0.54
%ile	79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.99	1619503_at	CB345056	hypothetical protein LOC100254346	-	2e-124	At5g23120	HCF136	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1612906_at	CB973863	hypothetical protein LOC100257384	-	3e-21	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1618670_at	BQ798857	hypothetical protein LOC100264831	-	2e-14	At5g27560	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1609931_at	CF512273	hypothetical protein LOC100264352	-	3e-4	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1622642_at	CA814554	hypothetical protein LOC100244293	-	2e+0	At5g51110	4-alpha-hydroxytetrahydrobiopterin dehydratase	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.99	1609310_at	CB342641	hypothetical protein LOC100249576	-	2e-177	At1g56190	phosphoglycerate kinase, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	91.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.0	88.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.9	87.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
1.9	87.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.9	87.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.9	87.2	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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