Co-expression analysis

Gene ID	1619471_at
Gene name	hypothetical protein LOC100243217
Homology with Arabidopsis	Similar to At3g46060: ATRAB8A (HF=1e-112)
Module size	6 genes
NF	0.64
%ile	90.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.99	1619471_at	BQ794353	hypothetical protein LOC100243217	-	1e-112	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1606813_s_at	CF211962	hypothetical protein LOC100245986	-	9e-77	At5g47200	ATRAB1A	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1618227_at	CB981519	hypothetical protein LOC100256050	-	4e-20	At1g73570	suppressor of lin-12-like protein-related / sel-1 protein-related	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1616331_at	CF212969	hypothetical protein LOC100261989	-	6e-25	At3g08890	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1613490_at	BQ800479	hypothetical protein LOC100241970	-	7e-22	At4g39220	ATRER1A	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1607294_at	CB347461	hypothetical protein LOC100246786	-	4e-112	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
2.3	90.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.1	89.1	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, Zm.6039.1.A1_at, orthologous to the query gene, 1619471_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	Zm.6039.1.A1_at	At3g46060	-	-	9e-65	At5g03520	ATRAB8C	O.I.	H.G.	S.X.	Please select
0.78	92.5	Zm.5220.1.S1_at	At3g46060	hypothetical protein LOC100279470	-	1e+0	At5g36120	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	O.I.	H.G.	S.X.	Please select
0.69	86.5	Zm.18590.1.A1_at	At3g46060	exostosin-like	-	1e+0	At5g22930	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	Zm.5441.1.S1_at	At3g46060	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	O.I.	H.G.	S.X.	Please select
0.64	81.7	Zm.16482.2.A1_at	At3g46060	-	-	9e-19	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	O.I.	H.G.	S.X.	Please select
0.62	79.8	Zm.18903.1.A1_at	At3g46060	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.62	79.8	ZmAffx.1097.1.S1_at	At3g46060	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	79.8	Zm.4561.2.A1_x_at	At3g46060	-	-	6e+0	At5g65520	binding	O.I.	H.G.	S.X.	Please select
0.62	79.8	Zm.3484.1.A1_at	At3g46060	hypothetical protein LOC100273241	-	2e+0	At1g67700	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.5917.1.A1_a_at	At3g46060	hypothetical protein LOC100192679	-	2e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.19059.1.A1_at	At3g46060	hypothetical protein LOC100193008	-	4e-1	At1g78170	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.10315.1.S1_at	At3g46060	uncoupling protein	-	6e-5	At5g58970	ATUCP2 (UNCOUPLING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.4099.2.A1_s_at	At3g46060	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.1546.3.A1_x_at	At3g46060	-	-	1e-6	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.17772.1.S1_at	At3g46060	-	-	6e-2	At4g28170	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.6011.1.A1_at	At3g46060	hypothetical protein LOC100280191	-	2e-10	At1g34420	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.2967.1.A1_at	At3g46060	-	-	1e+0	At1g30110	ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.12132.3.S1_a_at	At3g46060	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.6418.1.S1_at	At3g46060	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.4462.1.A1_at	At3g46060	-	-	1e+1	At4g00342	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.10082.1.A1_at	At3g46060	hypothetical protein LOC100279529	-	3e-10	At5g18590	kelch repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.9792.1.A1_at	At3g46060	pleckstrin homology domain-containing protein 1	-	7e-3	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.11907.1.S1_at	At3g46060	hypothetical protein LOC100194010	-	2e-15	At3g24090	glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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