Co-expression analysis

Gene ID	1619471_at
Gene name	hypothetical protein LOC100243217
Homology with Arabidopsis	Similar to At3g46060: ATRAB8A (HF=1e-112)
Module size	6 genes
NF	0.64
%ile	90.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.99	1619471_at	BQ794353	hypothetical protein LOC100243217	-	1e-112	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1606813_s_at	CF211962	hypothetical protein LOC100245986	-	9e-77	At5g47200	ATRAB1A	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1618227_at	CB981519	hypothetical protein LOC100256050	-	4e-20	At1g73570	suppressor of lin-12-like protein-related / sel-1 protein-related	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1616331_at	CF212969	hypothetical protein LOC100261989	-	6e-25	At3g08890	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1613490_at	BQ800479	hypothetical protein LOC100241970	-	7e-22	At4g39220	ATRER1A	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1607294_at	CB347461	hypothetical protein LOC100246786	-	4e-112	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
2.3	90.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.1	89.1	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2072.2.S1_s_at, orthologous to the query gene, 1619471_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	Ptp.2072.2.S1_s_at	At3g46060	hypothetical protein	-	6e-83	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.135416.1.S1_s_at	At3g46060	hypothetical protein	-	6e-2	At5g50650	WD-40 repeat family protein / St12p protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.4529.1.S1_at	At3g46060	hypothetical protein	-	4e-138	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.2152.2.S1_a_at	At3g46060	hypothetical protein	-	2e-5	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.113579.1.S1_s_at	At3g46060	hypothetical protein	-	4e-31	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.1287.2.S1_s_at	At3g46060	hypothetical protein	-	2e-73	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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