CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619471_at

Gene name hypothetical protein LOC100243217
Homology with Arabidopsis Similar to At3g46060: ATRAB8A (HF=1e-112)

Module size 6 genes

NF 0.64

%ile 90.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 90.8 0.99 1619471_at BQ794353 hypothetical protein LOC100243217 - 1e-112 At3g46060 ATRAB8A O.I. H.G. S.X.
0.67 87.9 0.99 1606813_s_at CF211962 hypothetical protein LOC100245986 - 9e-77 At5g47200 ATRAB1A O.I. H.G. S.X.
0.55 77.3 0.99 1618227_at CB981519 hypothetical protein LOC100256050 - 4e-20 At1g73570 suppressor of lin-12-like protein-related / sel-1 protein-related O.I. H.G. S.X.
0.50 72.7 0.99 1616331_at CF212969 hypothetical protein LOC100261989 - 6e-25 At3g08890 unknown protein O.I. H.G. S.X.
0.50 72.7 0.99 1613490_at BQ800479 hypothetical protein LOC100241970 - 7e-22 At4g39220 ATRER1A O.I. H.G. S.X.
0.50 72.7 0.99 1607294_at CB347461 hypothetical protein LOC100246786 - 4e-112 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 94.2 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.9 93.8 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM147688 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 17
2.3 90.7 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
2.1 89.1 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287871 Green hard berry C4 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the barley gene, Contig3337_s_at, orthologous to the query gene, 1619471_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 Contig3337_s_at At3g46060 - - 5e-50 At5g59840 Ras-related GTP-binding family protein O.I. H.G. S.X.
0.91 98.1 HF01J12w_s_at At3g46060 - - 4e-1 At2g32310 - O.I. H.G. S.X.
0.83 94.0 Contig5153_at At3g46060 chloroplast inner envelope protein-like - 3e+0 At5g46860 VAM3 O.I. H.G. S.X.
0.80 92.5 Contig2776_at At3g46060 - - 5e-20 At3g22890 APS1 (ATP SULFURYLASE 1) O.I. H.G. S.X.
0.47 62.2 rbags5f04_s_at At3g46060 - - 2e+0 At3g61678 unknown protein O.I. H.G. S.X.
0.35 45.1 Contig8498_at At3g46060 - - 6e-8 At4g36390 radical SAM domain-containing protein / TRAM domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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