Co-expression analysis

Gene ID	1619468_at
Gene name	pectin methylesterase PME1
Homology with Arabidopsis	Similar to At4g33220: enzyme inhibitor/ pectinesterase (HF=7e-8)
Module size	11 genes
NF	0.64
%ile	90.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.95	1619468_at	AY043232.1	pectin methylesterase PME1	-	7e-8	At4g33220	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.75	91.3	0.97	1609870_at	CB977378	hypothetical protein LOC100259790	-	8e-56	At3g60970	ATMRP15	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.97	1618333_at	CD798042	hypothetical protein LOC100264835	-	4e-3	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.97	1610275_at	CB006658	hypothetical protein LOC100246410	-	1e-9	At3g21250	ATMRP6	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.96	1609297_at	CB914618	-	-	1e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.97	1621395_at	CD797719	hypothetical protein LOC100243587 /// hypothetical protein LOC100251575	-	6e-7	At1g78380	ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.98	1621201_at	BQ794760	-	-	3e-1	At5g03870	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.97	1608432_s_at	CB004591	hypothetical protein LOC100266054	-	3e-9	At3g23690	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.97	1619742_at	AF265562.1	MAD-box transcripion factor	-	2e-16	At3g58780	SHP1 (SHATTERPROOF 1)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.97	1613204_at	AF501625.1	glutathione-S-transferase /// hypothetical protein LOC100249549 /// hypothetical LOC100267917	-	4e-8	At1g17180	ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.97	1617026_at	CD797284	-	-	2e-1	At2g43940	thiol methyltransferase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.7	93.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.4	91.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.4	91.3	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
2.3	90.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.1	89.1	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.1	89.1	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage