Co-expression analysis

Gene ID 1619407_s_at
Gene name hypothetical protein LOC100256548
Homology with ArabidopsisSimilar to At1g76690: OPR2 (HF=3e-12)
Module size 7 genes
NF 0.51
%ile 75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7591.30.951619407_s_atCA809049hypothetical protein LOC100256548-3e-12At1g76690OPR2O.I.H.G.S.X.
0.6183.20.971621722_atCB973627hypothetical protein LOC100267520-8e-43At1g53670MSRB1 (methionine sulfoxide reductase B 1)O.I.H.G.S.X.
0.5375.20.961614776_a_atCA816959hypothetical protein LOC100260705-6e-12At5g18100CSD3 (copper/zinc superoxide dismutase 3)O.I.H.G.S.X.
0.4666.50.961614135_atCF211085similar to PPX2 (protein phosphatase x-2); protein serine/threonine phosphatase-2e-179At5g55260PPX2 (PROTEIN PHOSPHATASE X 2)O.I.H.G.S.X.
0.3345.70.971617641_atCD004323hypothetical protein LOC100261810-6e-84At3g27240cytochrome c1, putativeO.I.H.G.S.X.
0.3345.70.971620181_atCA817405hypothetical protein LOC100261394-2e-16At5g06130chaperone protein dnaJ-relatedO.I.H.G.S.X.
0.3141.30.961622539_atCF511109hypothetical protein LOC100244218-7e-19At4g03020transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.4GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
2.793.0GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
2.491.3GSM436405V. riparia (VR, PI588259) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
2.390.7GSM436363Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM147729Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation58Link to GEO
2.189.1GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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