Co-expression analysis

Gene ID	1619359_at
Gene name	hypothetical protein LOC100258799
Homology with Arabidopsis	Similar to At5g24910: CYP714A1 (HF=3e-1)
Module size	6 genes
NF	0.30
%ile	42.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.89	1619359_at	CF404659	hypothetical protein LOC100258799	-	3e-1	At5g24910	CYP714A1	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.86	1622623_at	CF514619	hypothetical protein LOC100258799	-	1e+0	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.88	1608099_at	CD800698	brassinosteroid-6-oxidase	-	5e-6	At3g30180	BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.89	1620173_at	CF213526	hypothetical protein LOC100251671	-	4e-13	At2g38400	AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.91	1617251_at	BQ798174	hypothetical protein LOC100245662	-	1e+0	At5g66170	-	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.92	1612354_at	CF207154	hypothetical protein LOC100259498	-	5e-3	At3g28050	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	99.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.2	99.1	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.4	98.9	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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