Co-expression analysis

Gene ID	1619344_s_at
Gene name	hypothetical protein LOC100248250
Homology with Arabidopsis	Similar to At3g51730: saposin B domain-containing protein (HF=2e+0)
Module size	6 genes
NF	0.53
%ile	79.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1619344_s_at	CB968636	hypothetical protein LOC100248250	-	2e+0	At3g51730	saposin B domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1611030_at	BQ792570	hypothetical protein LOC100257929	-	2e-22	At5g47420	-	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.99	1620064_at	CF211420	hypothetical protein LOC100251825	-	3e-58	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.99	1610024_at	CA809549	hypothetical protein LOC100250743	-	2e-33	At5g20090	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1617139_s_at	CF202008.1	hypothetical protein LOC100246711	-	7e+0	At5g37580	-	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.99	1607294_at	CB347461	hypothetical protein LOC100246786	-	4e-112	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.7	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.30368.1.S1_at, orthologous to the query gene, 1619344_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.30368.1.S1_at	At3g51730	hypothetical protein	-	1e-1	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.14629.1.S1_at	At3g51730	f-box family protein /// f-box family protein	-	2e-1	At2g02870	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.7528.1.S1_at	At3g51730	hypothetical protein	-	6e-10	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.7060.1.A1_x_at	At3g51730	hypothetical protein	-	9e-27	At1g23290	RPL27AB	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.5696.1.S1_s_at	At3g51730	hypothetical protein	-	5e-41	At2g19830	SNF7.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.12741.1.A1_at	At3g51730	-	-	8e-2	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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