Co-expression analysis

Gene ID	1619335_at
Gene name
Homology with Arabidopsis	Similar to At4g09775: - (HF=2e+0)
Module size	15 genes
NF	0.28
%ile	39.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.92	1619335_at	CB005450	-	-	2e+0	At4g09775	-	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.95	1613291_at	CF972323.1	-	-	4e-4	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.94	1612508_at	CB914120	-	-	9e-5	At1g70330	ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1617607_at	CB918932	-	-	3e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1617721_at	CF568847	-	-	1e-76	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1611372_at	CD711835	-	-	9e-61	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1621365_at	CK136934.1	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.93	1617143_at	CD006508	-	-	3e-1	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.94	1611659_at	CD712700	-	-	6e-40	At1g21650	ATP binding / protein binding	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1616784_at	CD007778	-	-	5e-45	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.94	1619684_at	CD715182	-	-	1e-10	At1g49050	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1609051_at	CA818195	-	-	4e-32	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.95	1606450_at	CD712784	-	-	2e-12	At3g20560	ATPDIL5-3 (PDI-LIKE 5-3)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.94	1622616_at	CB006094	-	-	4e-1	At5g42080	ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.94	1612824_at	CD712593	-	-	3e+0	At3g28230	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.7	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.9	87.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
1.9	87.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.7	84.7	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.7	84.7	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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