CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619325_at

Gene name hypothetical protein LOC100263459
Homology with Arabidopsis Similar to At3g14660: CYP72A13 (HF=6e-4)

Module size 6 genes

NF 0.41

%ile 61.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.31 41.3 0.90 1619325_at CF211836 hypothetical protein LOC100263459 - 6e-4 At3g14660 CYP72A13 O.I. H.G. S.X.
0.61 83.2 0.90 1610344_at BQ796295 hypothetical protein LOC100246080 - 9e-22 At1g21000 zinc-binding family protein O.I. H.G. S.X.
0.44 64.1 0.92 1612648_at CD798203 hypothetical protein LOC100260257 - 3e-1 At1g42960 - O.I. H.G. S.X.
0.40 57.7 0.93 1608066_at CB342796 hypothetical protein LOC100254977 - 5e-1 At5g43570 serine-type endopeptidase inhibitor O.I. H.G. S.X.
0.38 53.6 0.89 1608621_at CB970971 hypothetical protein LOC100265589 - 4e-1 At1g27490 - O.I. H.G. S.X.
0.31 41.3 0.91 1608060_at CF210997 - - 2e-1 At2g01420 PIN4 (PIN-FORMED 4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 96.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.9 96.6 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
3.8 96.4 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.2 94.9 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.0 94.2 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
2.8 93.4 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.8 93.4 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.7 93.0 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
2.6 92.5 GSM147713 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 42
2.6 92.5 GSM147724 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 53

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5901.3.S1_x_at, orthologous to the query gene, 1619325_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 89.8 Ta.5901.3.S1_x_at At3g14660 - - 4e+0 At5g21010 ATBPM5 (BTB-POZ and MATH domain 5) O.I. H.G. S.X.
0.57 79.2 Ta.12379.1.A1_at At3g14660 - - 2e+0 At5g52450 MATE efflux protein-related O.I. H.G. S.X.
0.50 72.4 Ta.10740.1.S1_x_at At3g14660 - - 8e+0 At3g60770 40S ribosomal protein S13 (RPS13A) O.I. H.G. S.X.
0.44 64.5 TaAffx.55202.1.S1_at At3g14660 - - 3e+0 At1g02950 ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4) O.I. H.G. S.X.
0.43 62.2 Ta.28879.1.S1_a_at At3g14660 - - 5e-8 At1g22280 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.40 58.4 Ta.13260.1.A1_at At3g14660 - - 4e-4 At5g62960 unknown protein O.I. H.G. S.X.
0.39 56.1 TaAffx.31.1.S1_at At3g14660 - - 3e+0 At3g24890 ATVAMP728 O.I. H.G. S.X.
0.39 56.1 Ta.28879.2.S1_x_at At3g14660 - - 3e-3 At1g34750 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.38 54.7 Ta.28879.1.S1_at At3g14660 - - 5e-8 At1g22280 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.34 48.1 Ta.23418.1.A1_at At3g14660 - - 4e+0 At4g31740 - O.I. H.G. S.X.
0.24 30.3 Ta.6155.1.S1_at At3g14660 - - 1e-1 At3g08890 unknown protein O.I. H.G. S.X.
0.22 27.1 TaAffx.19824.2.S1_s_at At3g14660 - - 1e-9 At4g27020 unknown protein O.I. H.G. S.X.
0.20 24.0 TaAffx.131873.1.S1_at At3g14660 - - 5e-3 At5g47860 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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