Co-expression analysis

Gene ID 1619323_at
Gene name hypothetical protein LOC100264304
Homology with ArabidopsisSimilar to At5g37780: CAM1 (CALMODULIN 1) (HF=7e+0)
Module size 6 genes
NF 0.63
%ile 89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.971619323_atCF413821hypothetical protein LOC100264304-7e+0At5g37780CAM1 (CALMODULIN 1)O.I.H.G.S.X.
0.7390.80.961607019_atCB922746hypothetical protein LOC100251940-3e+0At2g41420proline-rich family proteinO.I.H.G.S.X.
0.6787.90.971617668_atCF514659hypothetical protein LOC100243346-5e-4At4g11080high mobility group (HMG1/2) family proteinO.I.H.G.S.X.
0.5072.70.961616463_atCF208407hypothetical protein LOC100249922-4e-47At3g20060UBC19 (ubiquitin-conjugating enzyme19)O.I.H.G.S.X.
0.5072.70.961621815_atCF213959hypothetical protein LOC100261110-1e+0At1g12630DNA binding / transcription activator/ transcription factorO.I.H.G.S.X.
0.3141.30.971611168_atCF208285hypothetical protein LOC100247366-2e-139At1g50010TUA2O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.299.4GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
5.198.1GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.897.8GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.797.7GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.595.7GSM147725Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation54Link to GEO
2.993.8GSM147724Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation53Link to GEO
2.893.4GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.591.9GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.591.9GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.289.9GSM436382Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g37780, orthologous to the query gene, 1619323_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g37780833756CAM1 (CALMODULIN 1)encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.O.I.H.G.S.X.
0.4050.8At1g22300838837GRF10 (GENERAL REGULATORY FACTOR 10)Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1O.I.H.G.S.X.
0.4050.8At1g66410842959CAM4 (calmodulin 4)encodes a calmodulinO.I.H.G.S.X.
0.3541.6At3g50860824250clathrin adaptor complex small chain family proteinF:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MFOPO.I.H.G.S.X.
0.3541.6At4g24210828522SLY1 (SLEEPY1)F-box protein that is involved in GA signaling. Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins.O.I.H.G.S.X.
0.3439.8At1g29990839878PDF6 (PREFOLDIN 6)Encodes a cytoplastic protein with similarity to yeast prefoldin6, a subunit of the prefoldin complex. The PFD complex is thought to function along with the TCP ring complex to properly fold microtubule proteins.O.I.H.G.S.X.
0.3032.1At5g27720832834emb1644 (embryo defective 1644)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:small nucleolar ribonucleoprotein complex, nucleus;MFOPBVO.I.H.G.S.X.
0.2930.3At1g03150839562GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MBOFAPO.I.H.G.S.X.
0.2930.3At2g18040816316PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bondsO.I.H.G.S.X.
0.2830.3At2g44100819016ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)GDP dissociation inhibitor involved in vesicular membrane trafficO.I.H.G.S.X.
0.2830.3At3g46060823749ATRAB8Asmall GTP-binding protein (ara-3)O.I.H.G.S.X.
0.2726.2At5g09920830853NRPB4Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4)O.I.H.G.S.X.
0.2726.2At1g02130837023ARA-5 (ARABIDOPSIS RAS 5)Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation.O.I.H.G.S.X.
0.2726.2At1g47420841147-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleus;POO.I.H.G.S.X.
0.2726.2At5g52240835300MSBP1 (membrane steroid binding protein 1)Encodes a protein with similarity to progesterone-binding proteins in animals. Has been shown to bind steroids in vitro. Expressed in aerial portions of the plant excluding mature flowers and siliques. Antisense experiments suggest a role in inhibition of hypocotyl cell elongation. Expression is suppressed light grown seedlings transferred to the dark.O.I.H.G.S.X.
0.2624.4At5g08290830725YLS8Encodes Dim1 homolog.O.I.H.G.S.X.
0.2624.4At3g11200820290AL2 (ALFIN-LIKE 2)AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.O.I.H.G.S.X.
0.2624.4At4g32930829430unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.2624.4At4g27690828883VPS26B (VACUOLAR PROTEIN SORTING 26B)F:molecular_function unknown;P:intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi;C:retromer complex;MOFPO.I.H.G.S.X.
0.2522.6At2g27730817319unknown proteinF:molecular_function unknown;P:photorespiration;C:mitochondrion, nucleolus, mitochondrial membrane, vacuole, respiratory chain complex I;PO.I.H.G.S.X.
0.2522.6At5g53560835438CB5-E (CYTOCHROME B5 ISOFORM E)Encodes a cytochrome b5 isoform that can be reduced by AtCBR, a cytochrome b5 reductase.O.I.H.G.S.X.
0.2522.6At1g27000839590bZIP family transcription factorF:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POBMO.I.H.G.S.X.
0.2420.7At2g25280817066-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFPO.I.H.G.S.X.
0.2420.7At3g52300824395ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)F:hydrogen ion transmembrane transporter activity;P:response to salt stress;C:in 8 components;MPFOO.I.H.G.S.X.
0.2319.3At5g55940835692emb2731 (embryo defective 2731)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endoplasmic reticulum;MOPFO.I.H.G.S.X.
0.2217.5At2g29960817546CYP5 (CYCLOPHILIN 5)encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.O.I.H.G.S.X.
0.2217.5At2g21870816723unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleolus, chloroplast, plastid, membrane;PMOBAO.I.H.G.S.X.
0.2014.4At5g10780830945-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2014.4At4g12590826872unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, endoplasmic reticulum;MFOPO.I.H.G.S.X.
0.1912.7At5g08060830700unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POO.I.H.G.S.X.
0.1912.7At3g09740820132SYP71 (SYNTAXIN OF PLANTS 71)syntaxin of plants 71 (SYP71)O.I.H.G.S.X.
0.1811.4At3g54840824649ARA6Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.O.I.H.G.S.X.
0.1710.2At1g10630837606ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.1710.2At5g58030835915transport protein particle (TRAPP) component Bet3 family proteinF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.146.8At3g05530819718RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.O.I.H.G.S.X.
0.082.3At4g31480829275coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MOFPO.I.H.G.S.X.

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