Co-expression analysis

Gene ID	1619289_at
Gene name	hypothetical protein LOC100242328
Homology with Arabidopsis	Similar to At4g16265: NRPB9B (HF=1e+0)
Module size	6 genes
NF	0.42
%ile	62.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.98	1619289_at	CB340785	hypothetical protein LOC100242328	-	1e+0	At4g16265	NRPB9B	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1609761_a_at	CD800010	hypothetical protein LOC100262783	-	3e-7	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1613930_at	CF213897	hypothetical protein LOC100259771	-	4e-85	At5g21070	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1618681_at	BQ797518	hypothetical protein LOC100241923	-	1e-30	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1617194_at	BQ794485	hypothetical protein LOC100264514	-	5e-1	At5g37520	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.98	1607364_at	CB975561	-	-	4e+0	At1g77930	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.3	90.7	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.2	89.9	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.1	89.1	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65
1.8	86.0	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage