Co-expression analysis

Gene ID	1619232_at
Gene name	hypothetical protein LOC100248696
Homology with Arabidopsis	Similar to At3g06420: ATG8H (autophagy 8h) (HF=6e-6)
Module size	9 genes
NF	0.55
%ile	81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.6	0.98	1619232_at	CA817187	hypothetical protein LOC100248696	-	6e-6	At3g06420	ATG8H (autophagy 8h)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1615588_at	BQ796822	hypothetical protein LOC100241835	-	1e-17	At3g62580	-	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1608130_at	CF207500	hypothetical protein LOC100248764	-	2e-4	At3g57030	strictosidine synthase family protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.98	1611449_at	CD797700	hypothetical protein LOC100251803	-	6e-9	At5g47710	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.98	1610475_at	CB979928	hypothetical protein LOC100242577	-	1e-7	At4g20380	zinc finger protein (LSD1)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1608420_at	BQ795023	hypothetical protein LOC100247793	-	8e-86	At3g22845	emp24/gp25L/p24 protein-related	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1616936_s_at	CF519064	hypothetical protein LOC100241172	-	3e-8	At1g61065	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1612136_at	CF514670	-	-	3e-17	At5g55850	NOI	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1615976_at	CF517016	hypothetical protein LOC100247651	-	2e-113	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7	96.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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