Co-expression analysis

Gene ID 1619220_at
Gene name hypothetical protein LOC100257112
Homology with ArabidopsisSimilar to At1g23820: SPDS1 (spermidine synthase 1) (HF=3e-89)
Module size 11 genes
NF 0.38
%ile 56.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5679.40.971619220_atCA816725hypothetical protein LOC100257112-3e-89At1g23820SPDS1 (spermidine synthase 1)O.I.H.G.S.X.
0.6787.90.971613059_atCB982491hypothetical protein LOC100254296-7e-5At1g67785unknown proteinO.I.H.G.S.X.
0.5679.40.981606964_atCF415058hypothetical protein LOC100241624-2e-21At5g64130-O.I.H.G.S.X.
0.4361.50.981618980_atCB339254hypothetical protein LOC100250749-6e-6At4g37830cytochrome c oxidase-relatedO.I.H.G.S.X.
0.4260.10.981610451_s_atCD800289hypothetical protein LOC100245319-5e-9At3g01130unknown proteinO.I.H.G.S.X.
0.3650.70.981616782_s_atCB971306hypothetical protein LOC100251751-3e-8At5g49540unknown proteinO.I.H.G.S.X.
0.3141.30.981617530_s_atCA812136hypothetical protein LOC100258272-3e-4At3g12260complex 1 family protein / LVR family proteinO.I.H.G.S.X.
0.2937.70.971618371_atCA811058hypothetical protein LOC100248443-8e-5At2g37120DNA-binding S1FA family proteinO.I.H.G.S.X.
0.2734.00.981615356_atCF403414hypothetical protein LOC100267033-3e-5At3g53310transcriptional factor B3 family proteinO.I.H.G.S.X.
0.2530.50.981613072_atBQ798026similar to dicarboxylate/tricarboxylate carrier-6e-29At5g19760dicarboxylate/tricarboxylate carrier (DTC)O.I.H.G.S.X.
0.2530.50.981618945_atCF214077hypothetical protein LOC100253697-1e-25At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.793.0GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436353Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.683.3GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
1.683.3GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.683.3GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
1.581.7GSM436379Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.581.7GSM436363Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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