Co-expression analysis

Gene ID	1619190_at
Gene name	hypothetical protein LOC100254635
Homology with Arabidopsis	Similar to At5g24760: alcohol dehydrogenase, putative (HF=1e-7)
Module size	24 genes
NF	0.42
%ile	62.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	91.3	0.94	1619190_at	CD720196	hypothetical protein LOC100254635	-	1e-7	At5g24760	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.96	1617552_at	CF202269.1	hypothetical protein LOC100243817	-	4e-35	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.96	1621770_at	CB978874	-	-	1e+0	At1g10030	ERG28 (Arabidopsis homolog of yeast ergosterol28)	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.96	1621651_at	CB345580	-	-	1e+0	At4g01310	ribosomal protein L5 family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1621992_s_at	BQ793824	hypothetical protein LOC100259183	-	2e-11	At5g66290	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.95	1619805_at	CB976900	similar to leucine-rich repeat protein-related	-	4e-9	At1g25570	leucine-rich repeat protein-related	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1607612_at	CF202447.1	hypothetical protein LOC100262044	-	2e-12	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.95	1609018_at	CF204139.1	-	-	1e+0	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.96	1618490_s_at	CF209633	hypothetical protein LOC100241704	-	4e-4	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.96	1618976_at	CB973461	hypothetical protein LOC100249386	-	7e-2	At1g47790	F-box family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1609811_at	CF208639	-	-	4e+0	At5g37850	SOS4 (SALT OVERLY SENSITIVE 4)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1612717_s_at	CA814430	hypothetical protein LOC100259033	-	1e+0	At1g01225	NC domain-containing protein-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1618230_at	CD801769	hypothetical protein LOC100245789	-	2e+0	At4g21090	adrenodoxin-like ferredoxin 1	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.97	1611129_s_at	CB005644	hypothetical protein LOC100261235	-	2e+0	At2g06200	AtGRF6 (GROWTH-REGULATING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.96	1621019_at	CF201902.1	-	-	1e+0	At5g65360	histone H3	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.95	1608211_at	CD798213	hypothetical protein LOC100247578	-	6e+0	At3g55490	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1619170_at	CD802165	hypothetical protein LOC100249188	-	6e-12	At5g64500	membrane protein-related	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1609815_at	BQ798206	hypothetical protein LOC100241283	-	6e+0	At5g07520	GRP18 (GLYCINE-RICH PROTEIN 18)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1622017_at	BQ106735	hypothetical protein LOC100241648	-	4e-34	At1g74910	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1619663_at	CF212160	hypothetical protein LOC100243552	-	4e+0	At4g10920	KELP	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1615918_at	CD797632	hypothetical protein LOC100247805	-	3e+0	At5g19050	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.96	1611112_at	CB971308	hypothetical protein LOC100260186	-	9e-34	At2g45790	PMM (PHOSPHOMANNOMUTASE)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1620148_at	CF210107	hypothetical protein LOC100252338	-	3e-17	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1616315_s_at	CB970362	hypothetical protein LOC100254003	-	3e-16	At1g20330	SMT2 (STEROL METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
1.9	87.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.9	87.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.9	87.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.8	86.0	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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