CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1619141_at

Gene name
Homology with Arabidopsis Similar to At5g42655: - (HF=2e-1)

Module size 13 genes

NF 0.52

%ile 78.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 84.3 0.97 1619141_at CD801026 - - 2e-1 At5g42655 - O.I. H.G. S.X.
0.73 90.8 0.98 1613718_s_at CF202933.1 hypothetical protein LOC100241422 - 7e+0 At5g11120 unknown protein O.I. H.G. S.X.
0.72 89.7 0.98 1620509_at CF213694 hypothetical protein LOC100248585 - 2e-21 At4g39220 ATRER1A O.I. H.G. S.X.
0.67 87.9 0.98 1614948_at CF518835 hypothetical protein LOC100265775 - 6e-61 At4g35360 pantothenate kinase family protein O.I. H.G. S.X.
0.61 83.2 0.98 1621653_s_at CB974156 hypothetical protein LOC100261248 - 4e-17 At5g25757 unknown protein O.I. H.G. S.X.
0.60 81.9 0.98 1622052_s_at CF213694 hypothetical protein LOC100248585 - 2e-21 At4g39220 ATRER1A O.I. H.G. S.X.
0.57 79.8 0.98 1607847_at CF517305 - - 6e-50 At2g32170 - O.I. H.G. S.X.
0.55 77.3 0.98 1611308_at CF202925.1 hypothetical protein LOC100248182 - 6e-4 At3g47810 MAG1 (MAIGO 1) O.I. H.G. S.X.
0.48 68.8 0.98 1619577_at CF213082 hypothetical protein LOC100266782 - 1e+0 At4g28950 ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) O.I. H.G. S.X.
0.43 61.5 0.98 1612915_at CF212348 hypothetical protein LOC100247677 - 8e-115 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) O.I. H.G. S.X.
0.41 58.7 0.98 1611281_at BQ794736 hypothetical protein LOC100245241 - 2e+0 At5g50080 DNA binding / transcription factor O.I. H.G. S.X.
0.34 46.8 0.98 1619474_s_at CF215820 hypothetical protein LOC100262863 - 3e-5 At5g56600 PRF3 (PROFILIN 3) O.I. H.G. S.X.
0.24 28.7 0.98 1615783_s_at CA818556 hypothetical protein LOC100248438 - 2e-19 At2g40060 protein binding / structural molecule O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.4 97.3 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.1 94.6 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.5 91.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4 91.3 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287887 Green soft berry C23 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1 89.1 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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