Co-expression analysis

Gene ID 1619107_at
Gene name hypothetical protein LOC100247849
Homology with ArabidopsisSimilar to At3g58180: PBS lyase HEAT-like repeat-containing protein (HF=4e+0)
Module size 6 genes
NF 0.05
%ile 10.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.931619107_atCD801926hypothetical protein LOC100247849-4e+0At3g58180PBS lyase HEAT-like repeat-containing proteinO.I.H.G.S.X.
0.1111.30.951620607_s_atCB910956hypothetical protein LOC100259713-1e-1At2g47890zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.088.50.981614062_atCB982394hypothetical protein LOC100245196-5e+0At5g07630lipid transporterO.I.H.G.S.X.
0.077.80.981617351_atBQ792474hypothetical protein LOC100248023-3e-42At1g54140TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)O.I.H.G.S.X.
0.023.20.971608128_atCB342130hypothetical protein LOC100263010-5e-47At5g0951040S ribosomal protein S15 (RPS15D)O.I.H.G.S.X.
0.012.10.971607480_atCB917568hypothetical protein LOC100244871-2e-18At2g27110FRS3 (FAR1-related sequence 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.993.8GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
2.893.4GSM436395V. riparia (VR, PI588259) LD, 15h 7 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.491.3GSM147725Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation54Link to GEO
2.491.3GSM147731Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation60Link to GEO
2.289.9GSM147730Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation59Link to GEO
2.289.9GSM436399V. riparia (VR, PI588259) LD, 15h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
2.088.2GSM147738Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation67Link to GEO
2.088.2GSM147713Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation42Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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