Co-expression analysis

Gene ID	1619095_s_at
Gene name	hypothetical protein LOC100257742
Homology with Arabidopsis	Similar to At5g63280: zinc finger (C2H2 type) family protein (HF=8e-8)
Module size	9 genes
NF	0.43
%ile	64.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.97	1619095_s_at	CB341757	hypothetical protein LOC100257742	-	8e-8	At5g63280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.97	1619217_at	CF212944	-	-	8e-80	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.97	1611505_at	CF405131	-	-	8e-1	At3g61990	O-methyltransferase family 3 protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.97	1619141_at	CD801026	-	-	2e-1	At5g42655	-	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1607847_at	CF517305	-	-	6e-50	At2g32170	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1620509_at	CF213694	hypothetical protein LOC100248585	-	2e-21	At4g39220	ATRER1A	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1611281_at	BQ794736	hypothetical protein LOC100245241	-	2e+0	At5g50080	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1607235_at	CB340942	hypothetical protein LOC100259188	-	7e-1	At4g09620	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1608272_at	BQ796860	hypothetical protein LOC100255032	-	3e-36	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.1	99.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
2.0	88.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.0	88.2	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
1.8	86.0	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage