Co-expression analysis

Gene ID	1619068_at
Gene name	hypothetical protein LOC100250461
Homology with Arabidopsis	Similar to At4g14130: XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) (HF=1e-13)
Module size	29 genes
NF	0.35
%ile	50.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.0	0.84	1619068_at	CF215954	hypothetical protein LOC100250461	-	1e-13	At4g14130	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	O.I.	H.G.	S.X.	Please select
0.68	88.0	0.90	1610488_at	CK138238.1	-	-	1e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.62	83.3	0.91	1611093_at	CF204842.1	-	-	5e-22	At3g06483	PDK (PYRUVATE DEHYDROGENASE KINASE)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.88	1622710_at	CK138248.1	-	-	3e+0	At5g08505	-	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.89	1622493_at	CF208434	hypothetical protein LOC100257695	-	9e-11	At3g18000	XPL1 (XIPOTL 1)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.88	1607133_at	CB972306	hypothetical protein LOC100248153	-	2e-4	At1g68320	MYB62 (myb domain protein 62)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.91	1622384_at	CF205158.1	-	-	1e-3	At4g01590	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.93	1610655_at	CF516542	hypothetical protein LOC100245840	-	1e-32	At5g11160	APT5 (Adenine phosphoribosyltransferase 5)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.91	1614254_at	CD008037	-	-	3e-1	At3g10980	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.91	1619144_at	CK138206.1	-	-	3e+0	At5g14360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.92	1608730_at	CF568993	-	-	6e-73	At3g51850	CPK13	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.91	1614207_at	CB976747	hypothetical protein LOC100241610	-	2e-38	At3g47340	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.91	1612239_at	CF610039	hypothetical protein LOC100262668	-	5e-7	At1g78060	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.93	1620034_at	CF568846	-	-	4e+0	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.93	1607988_at	CF209064	hypothetical protein LOC100253940	-	2e-8	At5g46880	HB-7 (HOMEOBOX-7)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.93	1617587_at	CF403573	hypothetical protein LOC100246521	-	1e+0	At4g24750	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.93	1609936_at	CK138160.1	-	-	1e-25	At1g72730	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.91	1610562_at	CF514967	hypothetical protein LOC100249618	-	4e-32	At2g39130	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.90	1618203_at	CA809351	hypothetical protein LOC100246896	-	1e+0	At4g21740	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.91	1614521_at	CB972210	hypothetical protein LOC100259570	-	4e-1	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.91	1609927_at	CF568812	-	-	1e-80	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.89	1617632_at	CF210911	hypothetical protein LOC100265855	-	4e+0	At4g09440	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.91	1614174_at	CF204824.1	-	-	1e+0	At1g23360	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.90	1619906_at	CK138175.1	hypothetical protein LOC100241815	-	6e-2	At3g49845	-	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.95	1620920_at	CB349109	hypothetical protein LOC100245710	-	6e-5	At1g70950	-	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.93	1612677_at	CF512277	hypothetical protein LOC100252316	-	1e+0	At3g21730	dihydroneopterin aldolase family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.94	1609339_at	CF518412	hypothetical protein LOC100249314	-	5e-12	At4g14900	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.91	1610746_at	CF511062	hypothetical protein LOC100265200	-	1e+0	At4g02530	chloroplast thylakoid lumen protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.92	1612089_at	CF212718	-	-	2e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	89.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
1.6	83.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.6	83.3	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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