Co-expression analysis

Gene ID	1619027_at
Gene name
Homology with Arabidopsis	Similar to At4g39250: ATRL1 (ARABIDOPSIS RAD-LIKE 1) (HF=7e-2)
Module size	6 genes
NF	0.27
%ile	37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.91	1619027_at	CA818485	-	-	7e-2	At4g39250	ATRL1 (ARABIDOPSIS RAD-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.89	1606889_at	CA817233	-	-	4e+0	At1g69210	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.89	1612448_at	CA817520	hypothetical protein LOC100256681	-	1e-10	At2g17040	anac036 (Arabidopsis NAC domain containing protein 36)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.89	1608318_at	CD802434	hypothetical LOC100241440	-	1e-3	At2g44580	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.90	1618088_at	CF215074	hypothetical protein LOC100250661 /// hypothetical protein LOC100265273	-	2e+0	At1g61105	disease resistance protein-related	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.89	1610923_a_at	CD710821	isoflavone reductase-like protein 5	-	9e-31	At4g39230	isoflavone reductase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
3.3	95.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.3	95.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.2	94.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.2	94.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.2	94.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
3.1	94.6	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.0	94.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.0	94.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.0	94.2	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage