Co-expression analysis

Gene ID	1618968_at
Gene name	hypothetical protein LOC100248614
Homology with Arabidopsis	Similar to At5g18240: MYR1 (MYb-related protein 1) (HF=2e-22)
Module size	6 genes
NF	0.78
%ile	97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.93	1618968_at	CA817496	hypothetical protein LOC100248614	-	2e-22	At5g18240	MYR1 (MYb-related protein 1)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.95	1611392_at	CF517133	hypothetical protein LOC100246263	-	5e+0	At3g03430	polcalcin, putative / calcium-binding pollen allergen, putative	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.95	1609315_at	CD798625	-	-	5e+0	At5g40750	-	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.95	1611063_at	CB340267	hypothetical protein LOC100246364	-	5e-5	At1g17100	SOUL heme-binding family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1610662_at	CF513787	hypothetical protein LOC100254082	-	3e-2	At1g76020	-	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.94	1615361_at	CA814618	-	-	4e-11	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	99.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.2	94.9	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436386	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436401	V. riparia (VR, PI588259) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage