Co-expression analysis

Gene ID 1618934_at
Gene name hypothetical protein LOC100264485
Homology with ArabidopsisSimilar to At5g23890: - (HF=3e-20)
Module size 6 genes
NF 0.44
%ile 66.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.60.971618934_atCB343172hypothetical protein LOC100264485-3e-20At5g23890-O.I.H.G.S.X.
0.6787.90.971608179_atCB005049hypothetical protein LOC100260954-1e+0At5g26700germin-like protein, putativeO.I.H.G.S.X.
0.3853.60.971616843_atCF606887hypothetical protein LOC100252068-7e-17At4g18460D-Tyr-tRNA(Tyr) deacylase family proteinO.I.H.G.S.X.
0.3548.50.971620211_atCF513911hypothetical protein LOC100261483-1e+0At3g07565DNA bindingO.I.H.G.S.X.
0.3345.70.971609080_atBQ797210hypothetical protein LOC100265018-9e-21At5g54440unknown proteinO.I.H.G.S.X.
0.2530.50.981620802_atCB976446similar to putative pyruvate dehydrogenase E1 alpha subunit-3e-89At1g01090PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.90.951619432_atCD802043--7e-5At3g58140phenylalanyl-tRNA synthetase class IIc family proteinO.I.H.G.S.X.
0.5679.40.931615677_atCA816761--4e+0At4g21216unknown proteinO.I.H.G.S.X.
0.5679.40.961615252_atBQ792622hypothetical protein LOC100265321-6e-12At4g10030hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.5577.30.941611518_atCD797985--1e+1At5g17340unknown proteinO.I.H.G.S.X.
0.4464.10.971621419_atBQ796694similar to Os09g0515500-4e+0At3g53370DNA-binding S1FA family proteinO.I.H.G.S.X.
0.4361.50.981616023_atCB979152hypothetical protein LOC100252512-1e-38At1g50140ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.4057.70.951610450_atCD717368--1e+0At1g76955Expressed proteinO.I.H.G.S.X.
0.4057.70.951608276_atCF405421--2e+0At2g03710SEP4 (SEPALLATA 4)O.I.H.G.S.X.
0.4057.70.961608879_s_atCF204246.1hypothetical protein LOC100265837-2e-1At2g20920unknown proteinO.I.H.G.S.X.
0.4057.70.971617315_atCF514745hypothetical protein LOC100261900-6e-26At5g65930ZWI (ZWICHEL)O.I.H.G.S.X.
0.3650.70.971615608_atBQ792785hypothetical protein LOC100248960 /// hypothetical protein LOC100255476-1e-22At4g13050acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putativeO.I.H.G.S.X.
0.3446.80.941619173_atCF514879hypothetical protein LOC100267228-4e+0Atmg01120-O.I.H.G.S.X.
0.3345.70.951608595_atCF413802--1e+0At4g04580myb family transcription factorO.I.H.G.S.X.
0.3345.70.971614356_atBQ797477--6e-1At1g07880ATMPK13O.I.H.G.S.X.
0.3141.30.931611601_atCB977009hypothetical protein LOC100245304-2e+0At3g62820invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3141.30.941620803_atCD802327--2e-5At4g09070-O.I.H.G.S.X.
0.3141.30.951612668_atCF519076hypothetical protein LOC100266959-1e+0At3g26616unknown proteinO.I.H.G.S.X.
0.3141.30.981615727_atCF205417.1hypothetical protein LOC100261981-9e-2At4g31470pathogenesis-related protein, putativeO.I.H.G.S.X.
0.2937.70.951610448_atCF212667--7e-1At5g06690WCRKC1 (WCRKC THIOREDOXIN 1)O.I.H.G.S.X.
0.2937.70.951620655_atCB976776hypothetical protein LOC100245782-6e-7At5g65630GTE7 (Global transcription factor group E 7)O.I.H.G.S.X.
0.2937.70.951608228_atCB982916hypothetical protein LOC100262530-2e-1At1g67820protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.2937.70.951617858_atCF206233.1--5e-12At4g17360formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferaseO.I.H.G.S.X.
0.2734.00.931619146_atCB001152--4e+0At2g34140Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.2734.00.941614176_atCB004193--2e+0At1g23280MAK16 protein-relatedO.I.H.G.S.X.
0.2734.00.961608294_atBQ792612hypothetical LOC100247896-1e+0At5g06230unknown proteinO.I.H.G.S.X.
0.2734.00.971617761_atCB005291--6e-4At1g59660nucleoporin family proteinO.I.H.G.S.X.
0.2734.00.971615531_atCB347122hypothetical protein LOC100248795-8e-20At1g77260dehydration-responsive protein-relatedO.I.H.G.S.X.
0.2530.50.941622197_atCF403402hypothetical protein LOC100265428-2e-1At5g14600tRNA (adenine-N1-)-methyltransferaseO.I.H.G.S.X.
0.2530.50.941616838_atBQ797792--3e-1At1g12180-O.I.H.G.S.X.
0.2530.50.971618606_atCF513941hypothetical protein LOC100258842-5e-37At5g46290KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.194.6GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.793.0GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.289.9GSM436382Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.189.1GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM436383Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage