Co-expression analysis

Gene ID 1618934_at
Gene name hypothetical protein LOC100264485
Homology with ArabidopsisSimilar to At5g23890: - (HF=3e-20)
Module size 6 genes
NF 0.44
%ile 66.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.60.971618934_atCB343172hypothetical protein LOC100264485-3e-20At5g23890-O.I.H.G.S.X.
0.6787.90.971608179_atCB005049hypothetical protein LOC100260954-1e+0At5g26700germin-like protein, putativeO.I.H.G.S.X.
0.3853.60.971616843_atCF606887hypothetical protein LOC100252068-7e-17At4g18460D-Tyr-tRNA(Tyr) deacylase family proteinO.I.H.G.S.X.
0.3548.50.971620211_atCF513911hypothetical protein LOC100261483-1e+0At3g07565DNA bindingO.I.H.G.S.X.
0.3345.70.971609080_atBQ797210hypothetical protein LOC100265018-9e-21At5g54440unknown proteinO.I.H.G.S.X.
0.2530.50.981620802_atCB976446similar to putative pyruvate dehydrogenase E1 alpha subunit-3e-89At1g01090PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.194.6GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.793.0GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.289.9GSM436382Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.189.1GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM436383Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.79900.1.S1_at, orthologous to the query gene, 1618934_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2TaAffx.79900.1.S1_atAt5g23890--8e-1At2g19850-O.I.H.G.S.X.
0.012.4TaAffx.29433.1.S1_atAt5g23890--2e+0At2g33120SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)O.I.H.G.S.X.
0.012.4TaAffx.48650.1.S1_atAt5g23890--4e-2At4g27300S-locus protein kinase, putativeO.I.H.G.S.X.
0.000.7TaAffx.123483.1.S1_atAt5g23890--3e-2At1g62333unknown proteinO.I.H.G.S.X.
0.000.7Ta.1905.3.S1_x_atAt5g23890--2e-2At5g06460ATUBA2O.I.H.G.S.X.
0.000.7Ta.1078.2.S1_a_atAt5g23890Cyclophilin-8e-6At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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