Co-expression analysis

Gene ID 1618934_at
Gene name hypothetical protein LOC100264485
Homology with ArabidopsisSimilar to At5g23890: - (HF=3e-20)
Module size 6 genes
NF 0.44
%ile 66.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.60.971618934_atCB343172hypothetical protein LOC100264485-3e-20At5g23890-O.I.H.G.S.X.
0.6787.90.971608179_atCB005049hypothetical protein LOC100260954-1e+0At5g26700germin-like protein, putativeO.I.H.G.S.X.
0.3853.60.971616843_atCF606887hypothetical protein LOC100252068-7e-17At4g18460D-Tyr-tRNA(Tyr) deacylase family proteinO.I.H.G.S.X.
0.3548.50.971620211_atCF513911hypothetical protein LOC100261483-1e+0At3g07565DNA bindingO.I.H.G.S.X.
0.3345.70.971609080_atBQ797210hypothetical protein LOC100265018-9e-21At5g54440unknown proteinO.I.H.G.S.X.
0.2530.50.981620802_atCB976446similar to putative pyruvate dehydrogenase E1 alpha subunit-3e-89At1g01090PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.194.6GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.793.0GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.289.9GSM436382Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.189.1GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM436383Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g23890, orthologous to the query gene, 1618934_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5065.3At5g23890832454-F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAVO.I.H.G.S.X.
0.8793.5At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.O.I.H.G.S.X.
0.7385.5At1g15200838086protein-protein interaction regulator family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.7385.5At3g50690824233leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.7184.2At5g19900832112PRLI-interacting factor, putativeF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVAO.I.H.G.S.X.
0.6579.6At1g28420839740HB-1 (homeobox-1)F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVAO.I.H.G.S.X.
0.6579.6At2g40650818660pre-mRNA splicing factor PRP38 family proteinF:binding;P:RNA processing;C:cellular_component unknown;MBOFPVAO.I.H.G.S.X.
0.6378.1At2g39260818511RNA binding / binding / protein bindingF:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVAO.I.H.G.S.X.
0.6277.3At1g47970841215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.H.G.S.X.
0.6277.3At1g65440842855GTB1Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.O.I.H.G.S.X.
0.5974.7At2g25650817106DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.H.G.S.X.
0.5773.8At5g25060832577RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVAO.I.H.G.S.X.
0.5469.5At5g16950831558unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5065.3At1g74250843765DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:intracellular;MOBFPVAO.I.H.G.S.X.
0.4253.9At5g61310836252cytochrome c oxidase subunit Vc, putative / COX5C, putativeF:cytochrome-c oxidase activity;P:unknown;C:mitochondrial respiratory chain, endomembrane system;PO.I.H.G.S.X.
0.3948.4At3g24490822039transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBVO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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