Co-expression analysis

Gene ID	1618930_at
Gene name	hypothetical protein LOC100254102
Homology with Arabidopsis	Similar to At4g24660: ATHB22 (HOMEOBOX PROTEIN 22) (HF=2e+0)
Module size	18 genes
NF	0.29
%ile	40.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	95.5	0.97	1618930_at	CF206622.1	hypothetical protein LOC100254102	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.98	1610556_at	CF415554	hypothetical protein LOC100250209	-	4e+0	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.99	1619715_at	CF207152	hypothetical protein LOC100243011	-	5e-39	At1g30470	SIT4 phosphatase-associated family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	1618996_at	CD801234	hypothetical protein LOC100241601	-	8e-17	At5g41560	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1609035_at	BQ796729	hypothetical protein LOC100251284	-	2e-12	At2g40830	RHC1A	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1619013_at	CF514808	hypothetical protein LOC100242671	-	3e-32	At1g03260	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1622789_x_at	CF206467.1	-	-	4e+1	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.99	1615804_at	CF403733	-	-	4e-2	At5g65910	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1608302_at	BQ792683	hypothetical protein LOC100253708	-	4e-3	At4g26750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1617628_at	CF209591	hypothetical protein LOC100253844	-	7e-9	At1g06720	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1617731_at	CB971121	hypothetical protein LOC100263135	-	2e-12	At4g19670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1610189_at	CF211002	hypothetical protein LOC100257691	-	4e+0	At5g47830	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1615516_at	CF511735	hypothetical protein LOC100255660	-	5e+0	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1618759_at	CB348270	hypothetical protein LOC100256813	-	1e+0	At1g76010	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.98	1609452_at	BQ794280	hypothetical protein LOC100249768	-	3e-1	At4g31460	ribosomal protein L28 family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1618241_at	CF513295	hypothetical protein LOC100252311	-	6e-28	At5g43130	TAF4 (TBP-ASSOCIATED FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1606735_at	CB970224	hypothetical protein LOC100249353	-	4e+0	At3g15420	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1618764_at	CB978345	hypothetical protein LOC100252979	-	5e-1	At5g09910	ATP binding / GTP binding / transcription factor binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.9	87.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.6	83.3	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.6	83.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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